aiagents4pharma 1.43.0__tar.gz → 1.44.0__tar.gz

{aiagents4pharma-1.43.0 → aiagents4pharma-1.44.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aiagents4pharma
-Version: 1.43.0
+Version: 1.44.0
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License

{aiagents4pharma-1.43.0 → aiagents4pharma-1.44.0}/aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml

@@ -3,6 +3,8 @@ ollama_embeddings:
   - "nomic-embed-text"
 temperature: 0.1
 streaming: False
+
+# PCST Algorithm Parameters
 topk: 15
 topk_e: 15
 cost_e: 0.5
@@ -11,7 +13,20 @@ root: -1
 num_clusters: 1
 pruning: "gw"
 verbosity_level: 0
-search_metric_type: "IP"  # Inner Product
+
+# Hardware-Specific Vector Processing
+vector_processing:
+  # Enable dynamic metric type selection based on hardware
+  dynamic_metrics: true
+
+# Milvus Database Configuration
+milvus_db:
+  # Database and collection names
+  database_name: "t2kg_primekg"
+
+  # Cache settings for edge index
+  cache_edge_index_path: "${oc.env:CACHE_EDGE_INDEX_PATH,aiagents4pharma/talk2knowledgegraphs/tests/files/t2kg_primekg_edge_index.pkl}"
+
 node_id_column: "node_id"
 node_attr_column: "node_attr"
 edge_src_column: "edge_src"
@@ -34,4 +49,4 @@ biobridge:
     - "cellular_component"
     - "biological_process"
     - "drug"
-    - "disease"
+    - "disease"