aiagents4pharma 1.22.2__tar.gz → 1.22.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/PKG-INFO +4 -4
  2. aiagents4pharma-1.22.4/aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml +12 -0
  3. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/PKG-INFO +4 -4
  4. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/SOURCES.txt +1 -0
  5. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/requires.txt +3 -3
  6. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/pyproject.toml +4 -3
  7. aiagents4pharma-1.22.4/release_version.txt +1 -0
  8. aiagents4pharma-1.22.2/release_version.txt +0 -1
  9. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/LICENSE +0 -0
  10. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/README.md +0 -0
  11. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/__init__.py +0 -0
  12. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/__init__.py +0 -0
  13. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/agents/__init__.py +0 -0
  14. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/agents/t2b_agent.py +0 -0
  15. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/api/__init__.py +0 -0
  16. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/api/kegg.py +0 -0
  17. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/api/ols.py +0 -0
  18. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/api/uniprot.py +0 -0
  19. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/__init__.py +0 -0
  20. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/agents/__init__.py +0 -0
  21. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/__init__.py +0 -0
  22. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/default.yaml +0 -0
  23. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/config.yaml +0 -0
  24. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/__init__.py +0 -0
  25. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/ask_question/__init__.py +0 -0
  26. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/ask_question/default.yaml +0 -0
  27. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/__init__.py +0 -0
  28. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/default.yaml +0 -0
  29. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/get_annotation/__init__.py +0 -0
  30. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/configs/tools/get_annotation/default.yaml +0 -0
  31. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/models/__init__.py +0 -0
  32. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/models/basico_model.py +0 -0
  33. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/models/sys_bio_model.py +0 -0
  34. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/states/__init__.py +0 -0
  35. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +0 -0
  36. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/__init__.py +0 -0
  37. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_api.py +0 -0
  38. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_ask_question.py +0 -0
  39. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_basico_model.py +0 -0
  40. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_get_annotation.py +0 -0
  41. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py +0 -0
  42. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_integration.py +0 -0
  43. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_load_biomodel.py +0 -0
  44. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_param_scan.py +0 -0
  45. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_query_article.py +0 -0
  46. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_search_models.py +0 -0
  47. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_simulate_model.py +0 -0
  48. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_steady_state.py +0 -0
  49. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +0 -0
  50. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/__init__.py +0 -0
  51. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/ask_question.py +0 -0
  52. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/custom_plotter.py +0 -0
  53. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/get_annotation.py +0 -0
  54. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/get_modelinfo.py +0 -0
  55. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/load_arguments.py +0 -0
  56. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/load_biomodel.py +0 -0
  57. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/parameter_scan.py +0 -0
  58. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/query_article.py +0 -0
  59. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/search_models.py +0 -0
  60. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/simulate_model.py +0 -0
  61. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/steady_state.py +0 -0
  62. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2biomodels/tools/utils.py +0 -0
  63. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/__init__.py +0 -0
  64. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/agents/__init__.py +0 -0
  65. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/agents/scp_agent.py +0 -0
  66. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/states/__init__.py +0 -0
  67. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/states/state_talk2cells.py +0 -0
  68. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py +0 -0
  69. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/tools/__init__.py +0 -0
  70. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/tools/scp_agent/__init__.py +0 -0
  71. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py +0 -0
  72. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py +0 -0
  73. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/__init__.py +0 -0
  74. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/agents/__init__.py +0 -0
  75. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py +0 -0
  76. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/__init__.py +0 -0
  77. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/__init__.py +0 -0
  78. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/default.yaml +0 -0
  79. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/app/__init__.py +0 -0
  80. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/__init__.py +0 -0
  81. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/default.yaml +0 -0
  82. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/config.yaml +0 -0
  83. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/__init__.py +0 -0
  84. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/__init__.py +0 -0
  85. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/default.yaml +0 -0
  86. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/__init__.py +0 -0
  87. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/default.yaml +0 -0
  88. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/__init__.py +0 -0
  89. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/default.yaml +0 -0
  90. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py +0 -0
  91. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py +0 -0
  92. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py +0 -0
  93. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py +0 -0
  94. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py +0 -0
  95. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/states/__init__.py +0 -0
  96. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/states/state_talk2knowledgegraphs.py +0 -0
  97. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/__init__.py +0 -0
  98. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_agents_t2kg_agent.py +0 -0
  99. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py +0 -0
  100. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py +0 -0
  101. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py +0 -0
  102. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py +0 -0
  103. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_tools_graphrag_reasoning.py +0 -0
  104. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_extraction.py +0 -0
  105. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_summarization.py +0 -0
  106. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py +0 -0
  107. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py +0 -0
  108. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_nim_molmim.py +0 -0
  109. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_ollama.py +0 -0
  110. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py +0 -0
  111. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py +0 -0
  112. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ollama.py +0 -0
  113. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_pubchem.py +0 -0
  114. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_kg_utils.py +0 -0
  115. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tests/test_utils_pubchem_utils.py +0 -0
  116. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tools/__init__.py +0 -0
  117. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tools/graphrag_reasoning.py +0 -0
  118. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tools/load_arguments.py +0 -0
  119. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tools/subgraph_extraction.py +0 -0
  120. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/tools/subgraph_summarization.py +0 -0
  121. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/__init__.py +0 -0
  122. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py +0 -0
  123. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py +0 -0
  124. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py +0 -0
  125. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/nim_molmim.py +0 -0
  126. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/ollama.py +0 -0
  127. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py +0 -0
  128. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py +0 -0
  129. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py +0 -0
  130. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py +0 -0
  131. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/enrichments/pubchem_strings.py +0 -0
  132. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/extractions/__init__.py +0 -0
  133. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/extractions/pcst.py +0 -0
  134. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py +0 -0
  135. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2knowledgegraphs/utils/pubchem_utils.py +0 -0
  136. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/__init__.py +0 -0
  137. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/agents/__init__.py +0 -0
  138. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/agents/main_agent.py +0 -0
  139. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/agents/s2_agent.py +0 -0
  140. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/__init__.py +0 -0
  141. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/__init__.py +0 -0
  142. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/talk2scholars/__init__.py +0 -0
  143. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/__init__.py +0 -0
  144. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/default.yaml +0 -0
  145. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/__init__.py +0 -0
  146. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/default.yaml +0 -0
  147. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/app/__init__.py +0 -0
  148. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/app/frontend/__init__.py +0 -0
  149. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/app/frontend/default.yaml +0 -0
  150. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/config.yaml +0 -0
  151. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/__init__.py +0 -0
  152. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py +0 -0
  153. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml +0 -0
  154. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/__init__.py +0 -0
  155. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/search/__init__.py +0 -0
  156. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/search/default.yaml +0 -0
  157. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py +0 -0
  158. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/default.yaml +0 -0
  159. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/state/__init__.py +0 -0
  160. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/state/state_talk2scholars.py +0 -0
  161. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/__init__.py +0 -0
  162. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/test_llm_main_integration.py +0 -0
  163. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/test_main_agent.py +0 -0
  164. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/test_s2_agent.py +0 -0
  165. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/test_s2_tools.py +0 -0
  166. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tests/test_state.py +0 -0
  167. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/__init__.py +0 -0
  168. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/__init__.py +0 -0
  169. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/display_results.py +0 -0
  170. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/multi_paper_rec.py +0 -0
  171. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/query_results.py +0 -0
  172. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/retrieve_semantic_scholar_paper_id.py +0 -0
  173. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/search.py +0 -0
  174. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma/talk2scholars/tools/s2/single_paper_rec.py +0 -0
  175. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/dependency_links.txt +0 -0
  176. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/top_level.txt +0 -0
  177. {aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/setup.cfg +0 -0
{aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: aiagents4pharma
3
- Version: 1.22.2
3
+ Version: 1.22.4
4
4
  Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
5
5
  Classifier: Programming Language :: Python :: 3
6
6
  Classifier: License :: OSI Approved :: MIT License
@@ -18,15 +18,15 @@ Requires-Dist: hydra-core==1.3.2
18
18
  Requires-Dist: joblib==1.4.2
19
19
  Requires-Dist: langchain==0.3.7
20
20
  Requires-Dist: langchain-community==0.3.5
21
- Requires-Dist: langchain-core==0.3.31
21
+ Requires-Dist: langchain-core==0.3.40
22
22
  Requires-Dist: langchain-experimental==0.3.3
23
23
  Requires-Dist: langchain-nvidia-ai-endpoints==0.3.9
24
24
  Requires-Dist: langchain-openai==0.2.5
25
- Requires-Dist: langchain_ollama==0.2.2
25
+ Requires-Dist: langchain_ollama==0.2.3
26
26
  Requires-Dist: langgraph==0.2.66
27
27
  Requires-Dist: matplotlib==3.9.2
28
28
  Requires-Dist: openai==1.59.4
29
- Requires-Dist: ollama==0.4.6
29
+ Requires-Dist: ollama==0.4.7
30
30
  Requires-Dist: pandas==2.2.3
31
31
  Requires-Dist: pcst_fast==1.0.10
32
32
  Requires-Dist: plotly==5.24.1
aiagents4pharma-1.22.4/aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml ADDED
@@ -0,0 +1,12 @@
1
+ api_endpoint: "https://api.semanticscholar.org/graph/v1/paper/search"
2
+ request_timeout: 10
3
+ api_fields:
4
+ - "paperId"
5
+ - "title"
6
+ - "abstract"
7
+ - "year"
8
+ - "authors"
9
+ - "citationCount"
10
+ - "url"
11
+ # Commented fields that could be added later if needed
12
+ # - "externalIds"
{aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: aiagents4pharma
3
- Version: 1.22.2
3
+ Version: 1.22.4
4
4
  Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
5
5
  Classifier: Programming Language :: Python :: 3
6
6
  Classifier: License :: OSI Approved :: MIT License
@@ -18,15 +18,15 @@ Requires-Dist: hydra-core==1.3.2
18
18
  Requires-Dist: joblib==1.4.2
19
19
  Requires-Dist: langchain==0.3.7
20
20
  Requires-Dist: langchain-community==0.3.5
21
- Requires-Dist: langchain-core==0.3.31
21
+ Requires-Dist: langchain-core==0.3.40
22
22
  Requires-Dist: langchain-experimental==0.3.3
23
23
  Requires-Dist: langchain-nvidia-ai-endpoints==0.3.9
24
24
  Requires-Dist: langchain-openai==0.2.5
25
- Requires-Dist: langchain_ollama==0.2.2
25
+ Requires-Dist: langchain_ollama==0.2.3
26
26
  Requires-Dist: langgraph==0.2.66
27
27
  Requires-Dist: matplotlib==3.9.2
28
28
  Requires-Dist: openai==1.59.4
29
- Requires-Dist: ollama==0.4.6
29
+ Requires-Dist: ollama==0.4.7
30
30
  Requires-Dist: pandas==2.2.3
31
31
  Requires-Dist: pcst_fast==1.0.10
32
32
  Requires-Dist: plotly==5.24.1
{aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/SOURCES.txt RENAMED
@@ -151,6 +151,7 @@ aiagents4pharma/talk2scholars/configs/tools/__init__.py
151
151
  aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py
152
152
  aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml
153
153
  aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/__init__.py
154
+ aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml
154
155
  aiagents4pharma/talk2scholars/configs/tools/search/__init__.py
155
156
  aiagents4pharma/talk2scholars/configs/tools/search/default.yaml
156
157
  aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py
{aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/aiagents4pharma.egg-info/requires.txt RENAMED
@@ -8,15 +8,15 @@ hydra-core==1.3.2
8
8
  joblib==1.4.2
9
9
  langchain==0.3.7
10
10
  langchain-community==0.3.5
11
- langchain-core==0.3.31
11
+ langchain-core==0.3.40
12
12
  langchain-experimental==0.3.3
13
13
  langchain-nvidia-ai-endpoints==0.3.9
14
14
  langchain-openai==0.2.5
15
- langchain_ollama==0.2.2
15
+ langchain_ollama==0.2.3
16
16
  langgraph==0.2.66
17
17
  matplotlib==3.9.2
18
18
  openai==1.59.4
19
- ollama==0.4.6
19
+ ollama==0.4.7
20
20
  pandas==2.2.3
21
21
  pcst_fast==1.0.10
22
22
  plotly==5.24.1
{aiagents4pharma-1.22.2 → aiagents4pharma-1.22.4}/pyproject.toml RENAMED
@@ -23,15 +23,15 @@ dependencies = [
23
23
  "joblib==1.4.2",
24
24
  "langchain==0.3.7",
25
25
  "langchain-community==0.3.5",
26
- "langchain-core==0.3.31",
26
+ "langchain-core==0.3.40",
27
27
  "langchain-experimental==0.3.3",
28
28
  "langchain-nvidia-ai-endpoints==0.3.9",
29
29
  "langchain-openai==0.2.5",
30
- "langchain_ollama==0.2.2",
30
+ "langchain_ollama==0.2.3",
31
31
  "langgraph==0.2.66",
32
32
  "matplotlib==3.9.2",
33
33
  "openai==1.59.4",
34
- "ollama==0.4.6",
34
+ "ollama==0.4.7",
35
35
  "pandas==2.2.3",
36
36
  "pcst_fast==1.0.10",
37
37
  "plotly==5.24.1",
@@ -89,6 +89,7 @@ aiagents4pharma = [
89
89
  "talk2scholars/configs/tools/multi_paper_recommendation/*",
90
90
  "talk2scholars/configs/tools/search/*",
91
91
  "talk2scholars/configs/tools/single_paper_recommendation/*",
92
+ "talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/*"
92
93
 
93
94
  ]
94
95
 
aiagents4pharma-1.22.4/release_version.txt ADDED
@@ -0,0 +1 @@
1
+ v1.22.4
aiagents4pharma-1.22.2/release_version.txt DELETED
@@ -1 +0,0 @@
1
- v1.22.2