aiagents4pharma 1.2.1__tar.gz → 1.3.0__tar.gz

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: aiagents4pharma
-Version: 1.2.1
+Version: 1.3.0
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
@@ -25,6 +25,12 @@ Requires-Dist: pytest==8.3.3
 Requires-Dist: streamlit==1.39.0
 Requires-Dist: tabulate==0.9.0
 Requires-Dist: tqdm==4.66.6
+Requires-Dist: mkdocs==1.6.1
+Requires-Dist: mkdocs-jupyter==0.25.1
+Requires-Dist: mkdocs-material==9.5.47
+Requires-Dist: mkdocstrings-python==1.12.2
+Requires-Dist: mkdocs-include-markdown-plugin==7.1.2
+Requires-Dist: mkdocstrings==0.27.0
 
 [![TESTS](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml/badge.svg?branch=feat%2Finitial-setup)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml)
 

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/aiagents4pharma/talk2biomodels/tools/ask_question.py

@@ -100,28 +100,6 @@ class AskQuestionTool(BaseTool):
         llm_result = df_agent.invoke(question)
         return llm_result["output"]
 
-    def call_run(self,
-            question: str,
-            sys_bio_model: ModelData = ModelData(),
-            st_session_key: str = None,
-            run_manager: Optional[CallbackManagerForToolRun] = None) -> str:
-        """
-        Run the tool.
-
-        Args:
-            question (str): The question to ask about the simulation results.
-            sys_bio_model (ModelData): The model data.
-            st_session_key (str): The Streamlit session key.
-            run_manager (Optional[CallbackManagerForToolRun]): The CallbackManagerForToolRun object.
-
-        Returns:
-            str: The answer to the question.
-        """
-        return self._run(question=question,
-                         sys_bio_model=sys_bio_model,
-                         st_session_key=st_session_key,
-                         run_manager=run_manager)
-
     def get_metadata(self):
         """
         Get metadata for the tool.

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/aiagents4pharma/talk2biomodels/tools/model_description.py

@@ -123,28 +123,6 @@ class ModelDescriptionTool(BaseTool):
         return chain.invoke({"description": description,
                              "question": question})
 
-    def call_run(self,
-            question: str,
-            sys_bio_model: ModelData = ModelData(),
-            st_session_key: str = None,
-            run_manager: Optional[CallbackManagerForToolRun] = None) -> str:
-        """
-        Run the tool.
-
-        Args:
-            question (str): The question to ask about the model description.
-            sys_bio_model (ModelData): The model data.
-            st_session_key (str): The Streamlit session key.
-            run_manager (Optional[CallbackManagerForToolRun]): The CallbackManagerForToolRun object.
-        
-        Returns:
-            str: The answer to the question
-        """
-        return self._run(question=question,
-                         sys_bio_model=sys_bio_model,
-                         st_session_key=st_session_key,
-                         run_manager=run_manager)
-
     def get_metadata(self):
         """
         Get metadata for the tool.

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/aiagents4pharma.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: aiagents4pharma
-Version: 1.2.1
+Version: 1.3.0
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
@@ -25,6 +25,12 @@ Requires-Dist: pytest==8.3.3
 Requires-Dist: streamlit==1.39.0
 Requires-Dist: tabulate==0.9.0
 Requires-Dist: tqdm==4.66.6
+Requires-Dist: mkdocs==1.6.1
+Requires-Dist: mkdocs-jupyter==0.25.1
+Requires-Dist: mkdocs-material==9.5.47
+Requires-Dist: mkdocstrings-python==1.12.2
+Requires-Dist: mkdocs-include-markdown-plugin==7.1.2
+Requires-Dist: mkdocstrings==0.27.0
 
 [![TESTS](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml/badge.svg?branch=feat%2Finitial-setup)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml)
 

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/aiagents4pharma.egg-info/requires.txt

@@ -15,3 +15,9 @@ pytest==8.3.3
 streamlit==1.39.0
 tabulate==0.9.0
 tqdm==4.66.6
+mkdocs==1.6.1
+mkdocs-jupyter==0.25.1
+mkdocs-material==9.5.47
+mkdocstrings-python==1.12.2
+mkdocs-include-markdown-plugin==7.1.2
+mkdocstrings==0.27.0

{aiagents4pharma-1.2.1 → aiagents4pharma-1.3.0}/pyproject.toml

@@ -29,7 +29,13 @@ dependencies = [
     "pytest==8.3.3",
     "streamlit==1.39.0",
     "tabulate==0.9.0",
-    "tqdm==4.66.6"
+    "tqdm==4.66.6",
+    "mkdocs==1.6.1",
+    "mkdocs-jupyter==0.25.1",
+    "mkdocs-material==9.5.47",
+    "mkdocstrings-python==1.12.2",
+    "mkdocs-include-markdown-plugin==7.1.2",
+    "mkdocstrings==0.27.0"
 ]
 dynamic = ["version"]
 

aiagents4pharma-1.3.0/release_version.txt

@@ -0,0 +1 @@
+v1.3.0

aiagents4pharma-1.2.1/release_version.txt

@@ -1 +0,0 @@
-v1.2.1