agentikernel 0.0.1__tar.gz

agentikernel-0.0.1/.gitignore

@@ -0,0 +1,13 @@
+# Python-generated files
+__pycache__/
+*.py[oc]
+build/
+dist/
+wheels/
+*.egg-info
+
+# Virtual environments
+.venv
+
+data_kernelspec/
+init.txt

agentikernel-0.0.1/LICENSE-2.0.txt

@@ -0,0 +1,202 @@
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agentikernel-0.0.1/PKG-INFO

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+Metadata-Version: 2.4
+Name: agentikernel
+Version: 0.0.1
+Summary: Jupyter Kernel containing an agent that can access to other kernels
+Project-URL: Repository, https://github.com/mariusgarenaux/agentikernel
+Author-email: Marius Garénaux Gruau <marius.garenaux-gruau@irisa.fr>
+Maintainer-email: Marius Garénaux Gruau <marius.garenaux-gruau@irisa.fr>
+License-File: LICENSE-2.0.txt
+Keywords: agent,ai,jupyter,kernel,pydantic-ai
+Requires-Python: >=3.13
+Requires-Dist: jupyter-client>=8.8.0
+Requires-Dist: pydantic-ai-kernel>=1.2.6
+Description-Content-Type: text/markdown
+
+# Agentikernel
+
+> BETA version
+
+This is an AI agent, wrapped in a jupyter kernel.
+
+It is made to interact with other kernels, through different levels of authorization :
+
+- read kernel history,
+
+(- send code to kernel with user validation) # not yet implemented
+
+- send code to kernel without user validation.
+
+This is a subclass of [pydantic-ai-kernel](https://github.com/mariusgarenaux/pydantic-ai-kernel).
+
+## Getting Started
+
+```bash
+pip install agentikernel
+```
+
+Then any jupyter front-end could access the kernel, for example :
+
+```bash
+pip install jupyter-console
+jupyter console --kernel agentikernel
+```
+
+for command line interface. But a jupyter notebook would also work.
+
+## Quick start
+
+Create a config file following the scheme [declared here](https://github.com/mariusgarenaux/pydantic-ai-kernel). For example :
+
+```yaml
+agent_name: agentik
+system_prompt: You are a specialist in code, always ready to analyze code from jupyter kernels.
+model:
+  model_name: qwen3:1.7b
+  model_type: openai
+  model_provider:
+    name: ollama
+    params:
+      base_url: http://localhost:11434/v1
+```
+
+> a permanent config file can be placed in `~/.jupyter/jupyter_agentikernel_config.yaml`.
+
+
+Then start the kernel `jupyter console --kernel agentikernel`, and send :
+
+```
+/load_config path_to_config_file.yaml
+```
+
+The kernel is now initialized with an inference provider.
+
+In an other window, start any jupyter kernel (default is python) :
+
+```bash
+jupyter console --ConnectionFileMixin.connection_file ./kernel_connection_file_test.json
+```
+
+> It creates a connection file named `kernel_connection_file_test.json`
+
+Within the agentikernel, run :
+
+```
+/add_kernel kernel_connection_file_test.json
+```
+
+Then, the agentikernel can use the python kernel, and you can access the variables, ... from any jupyter frontend connected to the python kernel.
+
+## Commands
+
+All commands from [pydantic-ai-kernel](https://github.com/mariusgarenaux/pydantic-ai-kernel) are inherited (`/load_config`, ...).
+
+We've added the following ones :
+
+- `/add_kernel path_to_kernel_connection_file --label tool_label`
+
+> Declares a tool to the pydantic-ai agent, that allows it to run code on the kernel. The kernel must already be running. The kernel connection file is created when you start any jupyter kernel, see [jupyter_client](https://jupyter-client.readthedocs.io/en/latest/kernels.html#connection-files). They are stored in a runtime directory, that you can access by runnning `jupyter --paths` [ref](https://docs.jupyter.org/en/stable/use/jupyter-directories.html#runtime-files)
+
+> By default, the agent has read-only access to the kernel. But it can be set to write, by specifying : `--mode=write`.
+
+- `/remove_kernel tool_label`
+
+> Removes the connection with the kernel that has label 'tool_label'. And removes the tool to call it for the agent. The kernel is not stopped, we just undeclare it to the agent. Connection can be made again by running /add_kernel.

agentikernel-0.0.1/README.md

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+# Agentikernel
+
+> BETA version
+
+This is an AI agent, wrapped in a jupyter kernel.
+
+It is made to interact with other kernels, through different levels of authorization :
+
+- read kernel history,
+
+(- send code to kernel with user validation) # not yet implemented
+
+- send code to kernel without user validation.
+
+This is a subclass of [pydantic-ai-kernel](https://github.com/mariusgarenaux/pydantic-ai-kernel).
+
+## Getting Started
+
+```bash
+pip install agentikernel
+```
+
+Then any jupyter front-end could access the kernel, for example :
+
+```bash
+pip install jupyter-console
+jupyter console --kernel agentikernel
+```
+
+for command line interface. But a jupyter notebook would also work.
+
+## Quick start
+
+Create a config file following the scheme [declared here](https://github.com/mariusgarenaux/pydantic-ai-kernel). For example :
+
+```yaml
+agent_name: agentik
+system_prompt: You are a specialist in code, always ready to analyze code from jupyter kernels.
+model:
+  model_name: qwen3:1.7b
+  model_type: openai
+  model_provider:
+    name: ollama
+    params:
+      base_url: http://localhost:11434/v1
+```
+
+> a permanent config file can be placed in `~/.jupyter/jupyter_agentikernel_config.yaml`.
+
+
+Then start the kernel `jupyter console --kernel agentikernel`, and send :
+
+```
+/load_config path_to_config_file.yaml
+```
+
+The kernel is now initialized with an inference provider.
+
+In an other window, start any jupyter kernel (default is python) :
+
+```bash
+jupyter console --ConnectionFileMixin.connection_file ./kernel_connection_file_test.json
+```
+
+> It creates a connection file named `kernel_connection_file_test.json`
+
+Within the agentikernel, run :
+
+```
+/add_kernel kernel_connection_file_test.json
+```
+
+Then, the agentikernel can use the python kernel, and you can access the variables, ... from any jupyter frontend connected to the python kernel.
+
+## Commands
+
+All commands from [pydantic-ai-kernel](https://github.com/mariusgarenaux/pydantic-ai-kernel) are inherited (`/load_config`, ...).
+
+We've added the following ones :
+
+- `/add_kernel path_to_kernel_connection_file --label tool_label`
+
+> Declares a tool to the pydantic-ai agent, that allows it to run code on the kernel. The kernel must already be running. The kernel connection file is created when you start any jupyter kernel, see [jupyter_client](https://jupyter-client.readthedocs.io/en/latest/kernels.html#connection-files). They are stored in a runtime directory, that you can access by runnning `jupyter --paths` [ref](https://docs.jupyter.org/en/stable/use/jupyter-directories.html#runtime-files)
+
+> By default, the agent has read-only access to the kernel. But it can be set to write, by specifying : `--mode=write`.
+
+- `/remove_kernel tool_label`
+
+> Removes the connection with the kernel that has label 'tool_label'. And removes the tool to call it for the agent. The kernel is not stopped, we just undeclare it to the agent. Connection can be made again by running /add_kernel.

agentikernel-0.0.1/agentikernel/__init__.py

@@ -0,0 +1,6 @@
+"""An example Jupyter kernel"""
+
+__version__ = "0.0.1"
+
+
+from .kernel import Agentikernel  # noqa: F401

agentikernel-0.0.1/agentikernel/__main__.py

@@ -0,0 +1,5 @@
+from ipykernel.kernelapp import IPKernelApp
+from . import Agentikernel
+
+
+IPKernelApp.launch_instance(kernel_class=Agentikernel)

agentikernel-0.0.1/agentikernel/kernel.py

@@ -0,0 +1,366 @@
+from pydantic_ai_kernel import PydanticAIBaseKernel
+from pydantic_ai_kernel.kernel import Command
+from statikomand import KomandParser
+import json
+
+from jupyter_client.blocking.client import BlockingKernelClient
+from pydantic_ai import Tool, ModelRetry
+from typing import Literal
+from dataclasses import dataclass
+
+
+ALL_KERNELS_LABELS: list[str] = [
+    "lama",
+    "loup",
+    "kaki",
+    "baba",
+    "yack",
+    "blob",
+    "flan",
+    "kiwi",
+    "taco",
+    "rose",
+    "thym",
+    "miel",
+    "lion",
+    "pneu",
+    "lune",
+    "ciel",
+    "coco",
+]
+
+
+@dataclass
+class Kernel:
+    label: str
+    connection_file: str
+    tool: Tool
+    kernel_client: BlockingKernelClient
+
+
+class Agentikernel(PydanticAIBaseKernel):
+
+    def __init__(self, **kwargs):
+        super().__init__(kernel_name="agentikernel", **kwargs)
+
+        self.add_commands()
+
+        self.all_kernels: dict[str, Kernel] = {}
+
+        self.kernel_label_rank = 0
+
+    def add_commands(self):
+        add_kernel_parser = KomandParser(prog="add_kernel")
+        add_kernel_parser.add_argument(
+            "connection_file", completer=self.add_kernel_cmd_completer
+        )
+        add_kernel_parser.add_argument("--label", "-l", dest="label")
+        add_kernel_parser.add_argument("--mode", "-m", dest="mode")
+        add_kernel_cmd = Command(self.add_kernel_cmd_handler, add_kernel_parser)
+        self.all_cmds["/add_kernel"] = add_kernel_cmd
+
+        remove_kernel_parser = KomandParser(prog="remove_kernel")
+        remove_kernel_parser.add_argument(
+            "label", completer=self.remove_kernel_completer
+        )
+        remove_kernel_cmd = Command(
+            self.remove_kernel_cmd_handler, remove_kernel_parser
+        )
+        self.all_cmds["/remove_kernel"] = remove_kernel_cmd
+
+        tools_parser = KomandParser(prog="tools")
+        tools_cmd = Command(self.tools_cmd_handler, tools_parser)
+        self.all_cmds["/tools"] = tools_cmd
+
+    def tools_cmd_handler(self, args):
+        return [each_tool.name for each_tool in self.tools]
+
+    def send_code_to_kernel(self, kernel_label: str, code: str) -> str:
+        """
+        Executes code on Jupyter Kernel, and returns execution result.
+        Used as tool for each new kernel added.
+
+        Parameters:
+        ---
+            - kernel_label (str): the label of the kernel
+            - code (str): the code which will be sent for execution
+                to kernel
+
+        Returns :
+        ---
+            Execution result of the kernel.
+        """
+        self.logger.debug(f"Running code : `{code}` on kernel `{kernel_label}`.")
+        if kernel_label not in self.all_kernels:
+            raise KeyError(f"Unknown key {kernel_label} in all_kernels list.")
+
+        client = self.all_kernels[kernel_label].kernel_client
+
+        self.logger.debug(f"Client channels : {client.channels_running}")
+        # Start communication channels
+        output = None
+        # Send execute request
+        msg_id = client.execute(code)
+        while True:
+            msg = client.get_iopub_msg(timeout=5)
+
+            if msg["parent_header"].get("msg_id") != msg_id:
+                continue
+
+            msg_type = msg["header"]["msg_type"]
+
+            if msg_type == "stream":
+                output = msg["content"]["text"]
+                break
+
+            elif msg_type == "execute_result":
+                output = msg["content"]["data"].get("text/plain", "")
+                break
+
+            elif msg_type == "error":
+                raise ModelRetry(f"Error when sending code to kernel : {msg}")
+
+            elif msg_type == "status":
+                if msg["content"]["execution_state"] == "idle":
+                    break
+
+        if output is None:
+            return ""
+        return output
+
+    def add_kernel_cmd_completer(self, word: str, rank: int | None) -> list[str]:
+        return self.complete_path(word)
+    
+
+    def add_read_kernel_history_tool(self, kernel_info: str, kernel_label: str):
+        tool_desc = f"""
+        This tools allows you retrieve information from a jupyter kernel.
+        You can access to all the code that was executed on the kernel, as well as the output. 
+
+        You can of course propose (if the user asks for it) example of code snippets to answer user's queries.
+
+        Here is the standardized description of the kernel, including what is the language,
+        language version, ... :
+
+        {json.dumps(kernel_info)}
+        """
+
+        tool_label = f"read_history_of_{kernel_label}"
+        tool = Tool.from_schema(
+            function=lambda :self.read_kernel_history(kernel_label=kernel_label),
+            name=tool_label,
+            description=tool_desc,
+            json_schema={
+                "additionalProperties": False,
+                # "properties": {
+                #     "code": {
+                #         "description": "the code which will be executed on the kernel",
+                #         "type": "str",
+                #     },
+                # },
+                # "required": ["code"],
+                # "type": "object",
+            },
+            takes_ctx=False,
+        )
+        self.kernel_label_rank += 1
+        return tool
+
+    def read_kernel_history(self, kernel_label):
+        self.logger.debug(f"Accessing history of kernel `{kernel_label}`.")
+        if kernel_label not in self.all_kernels:
+            raise KeyError(f"Unknown key {kernel_label} in all_kernels list.")
+
+        client = self.all_kernels[kernel_label].kernel_client
+
+        self.logger.debug(f"Client channels : {client.channels_running}")
+
+        # Send history request
+        msg_id = client.history(
+            raw=True,
+            output=True,
+            hist_access_type="range",
+            session=0,
+            start=1,
+            stop=1000,
+        )
+
+        # Wait for reply
+        while True:
+            msg = client.get_shell_msg()
+            if msg["parent_header"].get("msg_id") != msg_id:
+                continue
+
+            if msg["msg_type"] == "history_reply":
+                # history = msg["content"]["history"]
+                self.logger.debug(f"Kernel history : {msg['content']}")
+                msg_history = msg["content"]["history"]
+                break
+    
+
+        string_history = ""
+        for session, line, code in msg_history:
+            inp, out = code
+            string_history += f"In [{line}]: {inp}\n"
+            string_history += f"Out[{line}]: {out}\n"
+
+        return string_history
+
+
+    def add_run_code_on_kernel_tool(self, kernel_info, kernel_label):
+        tool_desc = f"""
+        This tools allows you to send code to a jupyter kernel; and retrieve the execution result.
+        The only argument you can give to the tool is the raw_code (string) that needs to be sent
+        to the kernel.
+
+        What is inside the code depends on the language of the kernel. For example, it can be python,
+        R, octave, ... It can also be just any request in raw text (for example for a kernel that treats
+        natural language !)
+
+        Here is the standardized description of the kernel; to help you construct the code you will send
+        to this kernel :
+        {json.dumps(kernel_info)}
+        """
+
+        tool_name = f"send_code_to_{kernel_label}"
+        tool = Tool.from_schema(
+            function=lambda code: self.send_code_to_kernel(
+                kernel_label=kernel_label, code=code
+            ),
+            name=tool_name,
+            description=tool_desc,
+            json_schema={
+                "additionalProperties": False,
+                "properties": {
+                    "code": {
+                        "description": "the code which will be executed on the kernel",
+                        "type": "str",
+                    },
+                },
+                "required": ["code"],
+                "type": "object",
+            },
+            takes_ctx=False,
+        )
+        self.kernel_label_rank += 1
+        return tool
+
+    def add_kernel_cmd_handler(self, args):
+        """
+        Adds a kernel to the tool of the agent. Making possible for the agent
+        to run code on this kernel, and retrieve the results.
+        """
+        if self.agent_config is None:
+            raise ValueError(
+                "Please load a configuration file for the agent before adding tools. Run /load_config to do so."
+            )
+
+        path = args.connection_file
+
+        new_kernel_client = BlockingKernelClient(connection_file=path)
+        new_kernel_client.load_connection_file()
+        self.logger.info(f"Loaded connection file located at {path}")
+
+        new_kernel_client.start_channels()
+        kernel_info = None
+
+        msg_id = new_kernel_client.kernel_info()
+        self.logger.debug(f"Kernel info message id : `{msg_id}`")
+        # Send kernel_info_request
+        while True:
+            msg = new_kernel_client.get_shell_msg(timeout=5)
+            self.logger.debug(f"Message from shell socket : `{msg}`")
+
+            if msg["parent_header"].get("msg_id") != msg_id:
+                continue
+
+            msg_type = msg["header"]["msg_type"]
+
+            if msg_type == "kernel_info_reply":
+                kernel_info = msg["content"]
+                break
+            if msg_type == "status":
+                if msg["content"]["execution_state"] == "idle":
+                    break
+
+        self.logger.debug(f"Retrieved kernel informations : `{kernel_info}`")
+        if kernel_info is None:
+            self.logger.warning(
+                f"Could not retrieve information from kernel connection file {path}"
+            )
+            return
+
+        kernel_label = args.label
+
+        if kernel_label is None:
+            if self.kernel_label_rank >= len(ALL_KERNELS_LABELS):
+                raise Exception("Too much kernel-tools for this agent.")
+
+            kernel_label = ALL_KERNELS_LABELS[self.kernel_label_rank]
+        if args.mode == "write":
+            write_tool = self.add_run_code_on_kernel_tool(kernel_info, kernel_label)
+            self.tools.append(write_tool)
+            
+        
+        read_tool = self.add_read_kernel_history_tool(kernel_info, kernel_label)
+        self.tools.append(read_tool)
+        
+        try:
+            self.agent = self.create_agent()  # updates agent
+        except ValueError as e:
+            new_kernel_client.stop_channels()
+            raise ValueError(
+                "Please load a configuration file for the agent before adding tools. Run /load_config to do so."
+            ) from e
+
+        self.all_kernels[kernel_label] = Kernel(
+                label=kernel_label,
+                connection_file=path,
+                tool=read_tool,
+                kernel_client=new_kernel_client,
+            )
+
+        self.logger.info(
+            f"Added kernel {kernel_label}."
+        )
+
+    def remove_kernel_cmd_handler(self, args):
+        label = args.label
+        kernel = self.all_kernels.get(label, None)
+        if kernel is None:
+            raise KeyError(f"Could not find any kernel with label `{label}`")
+
+        kernel.kernel_client.stop_channels()
+        del self.all_kernels[label]
+
+        tool_idx = None
+        for k, each_tool in enumerate(self.tools):
+            if each_tool.name == label:
+                tool_idx = k
+
+        self.logger.debug(f"Tool index :  `{tool_idx}`.")
+        if tool_idx is not None and 0 <= tool_idx <= len(self.tools) - 1:
+            self.logger.debug(f"Deleting tool : `{label}`")
+            del self.tools[tool_idx]
+
+        self.agent = self.create_agent()  # reinitializes agent
+        self.logger.debug(f"Stopped channel with kernel `{label}`")
+        self.logger.debug(f"List of tools : `{self.tools}`")
+
+    def remove_kernel_completer(self, word: str, rank: int | None):
+        all_labels = self.all_kernels.keys()
+        all_matches = []
+        for each_label in all_labels:
+            if len(each_label) < len(word):
+                continue
+            potential_match = each_label[: len(word)]
+            if potential_match == word:
+                all_matches.append(each_label)
+        return all_matches
+
+    def do_shutdown(self, restart):
+        for each_kernel in self.all_kernels:
+            self.all_kernels[each_kernel].kernel_client.stop_channels()
+            self.logger.debug(f"Stopped channels for kernel {each_kernel}")
+
+        return super().do_shutdown(restart)

agentikernel-0.0.1/hatch_build.py

@@ -0,0 +1,44 @@
+import os
+import sys
+from hatchling.builders.hooks.plugin.interface import BuildHookInterface
+
+
+import json
+import shutil
+
+from jupyter_client.kernelspec import KernelSpecManager
+from tempfile import TemporaryDirectory
+
+
+# use 'python' executable for portable wheels
+#
+kernel_json = {
+    "argv": ["python", "-m", "agentikernel", "-f", "{connection_file}"],
+    "display_name": "Agentik",
+    "language": "text",
+}
+
+
+class CustomHook(BuildHookInterface):
+    def initialize(self, version, build_data):
+        here = os.path.abspath(os.path.dirname(__file__))
+        sys.path.insert(0, here)
+        prefix = os.path.join(here, "data_kernelspec")
+
+        with TemporaryDirectory() as td:
+            os.chmod(td, 0o755)  # Starts off as 700, not user readable
+            with open(os.path.join(td, "kernel.json"), "w") as f:
+                json.dump(kernel_json, f, sort_keys=True)
+            print("Installing Jupyter kernel spec")
+
+            # Requires logo files in kernel root directory
+            cur_path = os.path.dirname(os.path.realpath(__file__))
+            for logo in ["logo-32x32.png", "logo-64x64.png"]:
+                try:
+                    shutil.copy(os.path.join(cur_path, logo), td)
+                except FileNotFoundError:
+                    print("Custom logo files not found. Default logos will be used.")
+
+            KernelSpecManager().install_kernel_spec(
+                td, "agentikernel", user=False, prefix=prefix
+            )

agentikernel-0.0.1/pyproject.toml

@@ -0,0 +1,34 @@
+[build-system]
+requires = ["hatchling>=1.10.0", "ipykernel", "jupyter-client"]
+build-backend = "hatchling.build"
+
+[project]
+name = "agentikernel"
+version = "0.0.1"
+description = "Jupyter Kernel containing an agent that can access to other kernels"
+readme = "README.md"
+requires-python = ">=3.13"
+dependencies = ["jupyter-client>=8.8.0", "pydantic-ai-kernel>=1.2.6"]
+authors = [
+    { name = "Marius Garénaux Gruau", email = "marius.garenaux-gruau@irisa.fr" },
+]
+maintainers = [
+    { name = "Marius Garénaux Gruau", email = "marius.garenaux-gruau@irisa.fr" },
+]
+keywords = ["ai", "kernel", "jupyter", "pydantic-ai", "agent"]
+
+[project.urls]
+Repository = "https://github.com/mariusgarenaux/agentikernel"
+
+
+[tool.hatch.version]
+path = "agentikernel/__init__.py"
+
+# Used to call hatch_build.py
+[tool.hatch.build.hooks.custom]
+
+[tool.hatch.build.targets.sdist]
+include = ["/agentikernel"]
+
+[tool.hatch.build.targets.wheel.shared-data]
+"data_kernelspec/share" = "share"