agenomic 0.1.0__tar.gz

agenomic-0.1.0/.github/workflows/ci.yml

@@ -0,0 +1,40 @@
+name: ci
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+
+jobs:
+  test:
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python: ["3.10", "3.11", "3.12", "3.13"]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python }}
+      - name: Install
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e ".[dev,all]"
+      - name: Ruff lint
+        run: ruff check src tests examples
+      - name: Ruff format
+        run: ruff format --check src tests examples
+      - name: Mypy
+        run: mypy src
+      - name: Pytest
+        run: pytest -v --cov=agenomic --cov-fail-under=85
+      - name: Run offline examples
+        if: matrix.os != 'windows-latest'
+        run: |
+          python examples/01_minimal_trace.py > /dev/null
+          python examples/02_decorator_jsonl.py > /dev/null
+          python examples/03_atep_local.py > /dev/null
+          python examples/05_langgraph_traced.py > /dev/null
+          python examples/07_offline_signed_release.py > /dev/null

agenomic-0.1.0/.github/workflows/release.yml

@@ -0,0 +1,46 @@
+name: release
+
+on:
+  push:
+    tags: ["v*"]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install build
+        run: python -m pip install --upgrade pip build
+      - name: Build wheel and sdist
+        run: python -m build
+      - uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+  publish:
+    needs: build
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write   # OIDC trusted publisher
+      contents: write
+    environment:
+      name: pypi
+      url: https://pypi.org/p/agenomic
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+      - name: Create GitHub Release
+        if: startsWith(github.ref, 'refs/tags/')
+        uses: softprops/action-gh-release@v2
+        with:
+          generate_release_notes: true
+          files: dist/*

agenomic-0.1.0/.gitignore

@@ -0,0 +1,38 @@
+# Python
+__pycache__/
+*.py[oc]
+*.egg-info/
+build/
+dist/
+wheels/
+.eggs/
+
+# Virtual environments
+.venv/
+venv/
+env/
+
+# Testing
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+htmlcov/
+.coverage
+.coverage.*
+coverage.xml
+
+# Agenomic
+*.atep
+# … except the committed golden wire-format anchors (see scripts/make_golden_fixture.py)
+!tests/fixtures/golden_atep_segments/*.atep
+.agenomic/
+
+# IDE
+.idea/
+.vscode/
+*.swp
+*~
+
+# OS
+.DS_Store
+Thumbs.db

agenomic-0.1.0/.python-version

@@ -0,0 +1 @@
+3.10

agenomic-0.1.0/AGENTS.md

@@ -0,0 +1,34 @@
+# agenomic-python — agent instructions
+
+Public Python SDK for Agenomic. Apache-2.0.
+
+## Product invariants
+
+1. Works fully offline. No primitive requires network.
+2. ATEP-native. Segments produced here are bit-for-bit compatible with
+   agenomic-cli and agenomic-cloud.
+3. Integrations are optional and lazy. Top-level imports never load
+   openai, anthropic, langgraph or mcp.
+
+## Engineering rules
+
+- mypy strict. No `Any` in public APIs.
+- pydantic v2 for all data models.
+- No `print()` in library code. Use `logging.getLogger("agenomic.<module>")`.
+- All public functions have docstrings with at least one example.
+- Async-first for I/O-bound primitives (HTTP, file streams). Provide sync
+  wrappers via `asyncio.run` only at the top level.
+- No bare `except:`. Catch specific exceptions.
+
+## Naming
+
+- Package: `agenomic`
+- CLI: `agenomic-py` (entry point)
+- ATEP file extension: `.atep`
+- Default config dir: `~/.config/agenomic/`
+
+## Security defaults
+
+- Redaction runs BEFORE any export.
+- ed25519 PEM keys loaded with file mode check (warn if not 0600).
+- HTTP client uses TLS verify=True. No `verify=False` flag exposed.

agenomic-0.1.0/CHANGELOG.md

@@ -0,0 +1,24 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+### Added
+
+- Hugging Face provider connector (`agenomic.providers.huggingface`): provider
+  alias normalization, `HuggingFaceConfig` with env loading and token
+  redaction, an httpx-based `HuggingFaceClient`
+  (`validate_credentials`, `resolve_model_metadata`, `generate_text`,
+  `embeddings`), and a lockfile model-entry builder (SHA-256 over canonical JSON).
+- Hugging Face instrumentation integration
+  (`agenomic.integrations.huggingface`): `instrument_huggingface` and
+  `trace_huggingface_call` record `ModelCall(provider="huggingface", ...)`
+  without ever logging the token.
+- `client.agent.load(path)` + `agent.configure_model(provider=, model=, task=)`
+  to write a provider-agnostic model config into a local `genome.yaml`/`.json`.
+- Optional dependency extra `huggingface` (`huggingface-hub>=0.20`). The SDK
+  core itself only requires `httpx`.

agenomic-0.1.0/LICENSE

@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
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+      and distribution as defined by Sections 1 through 9 of this document.
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+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
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+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
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+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for describing the origin of the Work and
+      reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
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+      negligent acts) or agreed to in writing, shall any Contributor be
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+      incidental, or consequential damages of any character arising as a
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+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
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+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Support. While redistributing the Work or
+      Derivative Works thereof, You may choose to offer, and charge a
+      fee for, acceptance of support, warranty, indemnity, or other
+      liability obligations and/or rights consistent with this License.
+      However, in accepting such obligations, You may act only on Your
+      own behalf and on Your sole responsibility, not on behalf of any
+      other Contributor, and only if You agree to indemnify, defend,
+      and hold each Contributor harmless for any liability incurred by,
+      or claims asserted against, such Contributor by reason of your
+      accepting any such warranty or support.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
+      replaced with your own identifying information. (Don't include
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+   Copyright 2026 Agenomic contributors
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+
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agenomic-0.1.0/PKG-INFO

@@ -0,0 +1,137 @@
+Metadata-Version: 2.4
+Name: agenomic
+Version: 0.1.0
+Summary: Python SDK for Agenomic — agent-native versioning, tracing, and ATEP signed event logs.
+Project-URL: Homepage, https://agenomic.dev
+Project-URL: Source, https://github.com/agenomic/agenomic-python
+Project-URL: Issues, https://github.com/agenomic/agenomic-python/issues
+Author: Agenomic contributors
+License: Apache-2.0
+License-File: LICENSE
+Keywords: agent,ai-act,atep,compliance,llm,tracing,versioning
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Software Development :: Libraries
+Requires-Python: >=3.10
+Requires-Dist: blake3<1,>=0.4
+Requires-Dist: cbor2<6,>=5.6
+Requires-Dist: cryptography<46,>=42
+Requires-Dist: httpx<1,>=0.27
+Requires-Dist: pydantic<3,>=2.7
+Requires-Dist: typing-extensions>=4.10
+Requires-Dist: ulid-py<2,>=1.1
+Provides-Extra: all
+Requires-Dist: anthropic>=0.34; extra == 'all'
+Requires-Dist: huggingface-hub>=0.20; extra == 'all'
+Requires-Dist: langgraph>=0.2; extra == 'all'
+Requires-Dist: mcp>=1.0; extra == 'all'
+Requires-Dist: openai>=1.40; extra == 'all'
+Requires-Dist: opentelemetry-api>=1.20; extra == 'all'
+Requires-Dist: opentelemetry-sdk>=1.20; extra == 'all'
+Provides-Extra: anthropic
+Requires-Dist: anthropic>=0.34; extra == 'anthropic'
+Provides-Extra: dev
+Requires-Dist: freezegun>=1.5; extra == 'dev'
+Requires-Dist: hypothesis>=6.110; extra == 'dev'
+Requires-Dist: jsonschema>=4.18; extra == 'dev'
+Requires-Dist: mypy>=1.11; extra == 'dev'
+Requires-Dist: opentelemetry-api>=1.20; extra == 'dev'
+Requires-Dist: opentelemetry-sdk>=1.20; extra == 'dev'
+Requires-Dist: pytest-asyncio>=0.23; extra == 'dev'
+Requires-Dist: pytest-cov>=5; extra == 'dev'
+Requires-Dist: pytest-httpx>=0.30; extra == 'dev'
+Requires-Dist: pytest>=8; extra == 'dev'
+Requires-Dist: ruff>=0.6; extra == 'dev'
+Provides-Extra: huggingface
+Requires-Dist: huggingface-hub>=0.20; extra == 'huggingface'
+Provides-Extra: langgraph
+Requires-Dist: langgraph>=0.2; extra == 'langgraph'
+Provides-Extra: mcp
+Requires-Dist: mcp>=1.0; extra == 'mcp'
+Provides-Extra: openai
+Requires-Dist: openai>=1.40; extra == 'openai'
+Provides-Extra: otel
+Requires-Dist: opentelemetry-api>=1.20; extra == 'otel'
+Requires-Dist: opentelemetry-sdk>=1.20; extra == 'otel'
+Description-Content-Type: text/markdown
+
+# agenomic-python
+
+[![CI](https://github.com/agenomic/agenomic-python/actions/workflows/ci.yml/badge.svg)](https://github.com/agenomic/agenomic-python/actions/workflows/ci.yml)
+[![PyPI](https://img.shields.io/pypi/v/agenomic.svg)](https://pypi.org/project/agenomic/)
+[![License: Apache 2.0](https://img.shields.io/badge/License-Apache_2.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+
+Python SDK for [Agenomic](https://agenomic.dev) — agent-native versioning, tracing, and ATEP signed event logs.
+
+Works fully offline. Cloud upload is optional.
+
+## Install
+
+```bash
+pip install agenomic
+```
+
+Optional integrations:
+
+```bash
+pip install "agenomic[openai]"      # OpenAI auto-instrumentation
+pip install "agenomic[anthropic]"   # Anthropic auto-instrumentation
+pip install "agenomic[huggingface]" # Hugging Face Hub + Inference
+pip install "agenomic[langgraph]"   # LangGraph state-graph tracing
+pip install "agenomic[all]"         # Everything
+```
+
+## Quickstart
+
+```python
+from agenomic.trace.decorator import trace_agent_run
+from agenomic.exporters.jsonl import JsonlExporter
+
+with JsonlExporter("traces.jsonl") as exporter:
+
+    @trace_agent_run(agent_id="agent://acme/demo", exporter=exporter)
+    def handle(query: str) -> dict:
+        return {"answer": query.upper()}
+
+    handle("hello")
+```
+
+That writes a signed-ready `TraceEnvelope` to `traces.jsonl`. No network. No
+account required.
+
+## What's in the box
+
+- `@trace_agent_run` decorator (sync + async) with contextvar-based propagation
+- `TraceEnvelope` pydantic v2 models compatible with `agenomic-spec`
+- `WorkflowSpec` / `SystemSpec` pydantic v2 models for the v0.2 workflow and
+  multi-agent system manifests (RFC 0009), with step-graph and role checks
+- ATEP segment writer/reader with BLAKE3 causal hashes and ed25519 signatures
+- Boundary redaction (REMOVE / MASK / HASH / TRUNCATE) with dotted paths
+- Exporters: JSONL, ATEP local, HTTP batched, multi fan-out
+- Optional, lazy-imported integrations: OpenAI, Anthropic, LangGraph, MCP
+- Async-first cloud client with idempotency keys + retry
+
+## Documentation
+
+- [Quickstart](docs/quickstart.md)
+- [Tracing](docs/tracing.md) · [Decorator](docs/decorator.md)
+- [ATEP](docs/atep.md) · [Redaction](docs/redaction.md)
+- [Integrations](docs/integrations.md) · [Cloud upload](docs/cloud-upload.md)
+- [Hugging Face provider](docs/providers/huggingface.md)
+- [Non-determinism disclaimer](docs/non-determinism.md)
+
+## Examples
+
+See [`examples/`](examples/) — minimal trace, decorator + JSONL, ATEP local,
+OpenAI traced, LangGraph traced, cloud upload, and a full offline signed
+release.
+
+## License
+
+Apache-2.0. See [LICENSE](LICENSE).

agenomic-0.1.0/README.md

@@ -0,0 +1,74 @@
+# agenomic-python
+
+[![CI](https://github.com/agenomic/agenomic-python/actions/workflows/ci.yml/badge.svg)](https://github.com/agenomic/agenomic-python/actions/workflows/ci.yml)
+[![PyPI](https://img.shields.io/pypi/v/agenomic.svg)](https://pypi.org/project/agenomic/)
+[![License: Apache 2.0](https://img.shields.io/badge/License-Apache_2.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+
+Python SDK for [Agenomic](https://agenomic.dev) — agent-native versioning, tracing, and ATEP signed event logs.
+
+Works fully offline. Cloud upload is optional.
+
+## Install
+
+```bash
+pip install agenomic
+```
+
+Optional integrations:
+
+```bash
+pip install "agenomic[openai]"      # OpenAI auto-instrumentation
+pip install "agenomic[anthropic]"   # Anthropic auto-instrumentation
+pip install "agenomic[huggingface]" # Hugging Face Hub + Inference
+pip install "agenomic[langgraph]"   # LangGraph state-graph tracing
+pip install "agenomic[all]"         # Everything
+```
+
+## Quickstart
+
+```python
+from agenomic.trace.decorator import trace_agent_run
+from agenomic.exporters.jsonl import JsonlExporter
+
+with JsonlExporter("traces.jsonl") as exporter:
+
+    @trace_agent_run(agent_id="agent://acme/demo", exporter=exporter)
+    def handle(query: str) -> dict:
+        return {"answer": query.upper()}
+
+    handle("hello")
+```
+
+That writes a signed-ready `TraceEnvelope` to `traces.jsonl`. No network. No
+account required.
+
+## What's in the box
+
+- `@trace_agent_run` decorator (sync + async) with contextvar-based propagation
+- `TraceEnvelope` pydantic v2 models compatible with `agenomic-spec`
+- `WorkflowSpec` / `SystemSpec` pydantic v2 models for the v0.2 workflow and
+  multi-agent system manifests (RFC 0009), with step-graph and role checks
+- ATEP segment writer/reader with BLAKE3 causal hashes and ed25519 signatures
+- Boundary redaction (REMOVE / MASK / HASH / TRUNCATE) with dotted paths
+- Exporters: JSONL, ATEP local, HTTP batched, multi fan-out
+- Optional, lazy-imported integrations: OpenAI, Anthropic, LangGraph, MCP
+- Async-first cloud client with idempotency keys + retry
+
+## Documentation
+
+- [Quickstart](docs/quickstart.md)
+- [Tracing](docs/tracing.md) · [Decorator](docs/decorator.md)
+- [ATEP](docs/atep.md) · [Redaction](docs/redaction.md)
+- [Integrations](docs/integrations.md) · [Cloud upload](docs/cloud-upload.md)
+- [Hugging Face provider](docs/providers/huggingface.md)
+- [Non-determinism disclaimer](docs/non-determinism.md)
+
+## Examples
+
+See [`examples/`](examples/) — minimal trace, decorator + JSONL, ATEP local,
+OpenAI traced, LangGraph traced, cloud upload, and a full offline signed
+release.
+
+## License
+
+Apache-2.0. See [LICENSE](LICENSE).

agenomic-0.1.0/docs/atep.md

@@ -0,0 +1,44 @@
+# ATEP
+
+ATEP is the **Attested Tamper-Evident Provenance** log format. It captures
+the full history of an agent — identity, capabilities, knowledge, policy,
+runtime, interactions, governance — as a chain of signed events.
+
+`agenomic-python` produces ATEP segments that are bit-for-bit compatible
+with `agenomic-cli` (Rust) and `agenomic-cloud`.
+
+## Concepts
+
+- **Event**: one signed unit. Carries a header, a payload, a 32-byte BLAKE3
+  causal hash over (header || payload || sorted parents), and an ed25519
+  signature over the causal hash.
+- **Segment**: a binary file (`.atep`) containing N events plus a header
+  with first/last HLC, event count, and a Merkle root over causal hashes.
+- **Store**: a directory layout with one `manifest.json` and one or more
+  segments per stream.
+
+## Streams
+
+| stream         | what goes in it                                           |
+| -------------- | --------------------------------------------------------- |
+| `identity`     | agent creation, ownership                                 |
+| `capability`   | enabled tools, permissions                                |
+| `knowledge`    | system prompts, knowledge bases attached                  |
+| `policy`       | policy rules, guardrails                                  |
+| `runtime`      | model fingerprint, runtime config                         |
+| `interaction`  | one event per agent run (the SDK's main output)           |
+| `governance`   | release decisions, approvals                              |
+
+## Wire format
+
+See [`src/agenomic/atep/segment.py`](../src/agenomic/atep/segment.py)
+for the canonical layout. CRC32 over everything before the trailing
+`PETA` magic protects against truncation. The 32-byte Merkle root over
+event causal hashes protects against per-event tampering.
+
+## Cross-implementation compat
+
+The fixture at
+[`tests/fixtures/golden_atep_segments/golden_v1.atep`](../tests/fixtures/golden_atep_segments/)
+is the wire-format anchor. Any implementation that wants to claim ATEP-v1
+compatibility MUST be able to read it and verify its signatures.