afquery 0.2.0__tar.gz → 0.2.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- afquery-0.2.1/Dockerfile +16 -0
- {afquery-0.2.0 → afquery-0.2.1}/PKG-INFO +1 -1
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/_version.py +2 -2
- afquery-0.2.0/Dockerfile +0 -6
- {afquery-0.2.0 → afquery-0.2.1}/.dockerignore +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/.github/workflows/ci.yml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/.github/workflows/docs.yml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/.github/workflows/release.yml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/.gitignore +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/LICENSE +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/README.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/benchmarking.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/debugging-results.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/filter-pass-tracking.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/multi-cohort-strategies.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/performance.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/pipeline-integration.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/advanced/ploidy-and-sex-chroms.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/faq.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/concepts.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/installation.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/motivation.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/preprocessing.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/quickstart.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/getting-started/understanding-output.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/annotate-vcf.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/create-database.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/dump-export.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/manifest-format.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/query.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/sample-filtering.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/guides/update-database.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/index.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/reference/cli.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/reference/data-model.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/reference/glossary.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/reference/python-api.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/troubleshooting.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/acmg-use-cases.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/clinical-prioritization.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/cohort-stratification.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/population-specific-af.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/pseudo-controls.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/sex-specific-af.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/docs/use-cases/technology-integration.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/mkdocs.yml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-01-remove-publication-section.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-02-drop-schema-v1.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-03-query-syntax-chrom-pos.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-04-wes-bed-validation.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-05-update-sample-metadata.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-06-multi-chromosome-query.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-07-doc-formatting-fixes.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-08-index-feature-list.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/plans/issue-09-doc-content-improvements.md +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/pyproject.toml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/recipes/afquery/meta.yaml +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/resources/normalize_vcf.sh +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/__init__.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/annotate.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/benchmark.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/bitmaps.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/capture.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/cli.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/cli.pyr +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/constants.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/database.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/dump.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/models.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/ploidy.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/__init__.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/build.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/compact.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/ingest.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/manifest.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/regions.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/synth.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/preprocess/update.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/src/afquery/query.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/conftest.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/annotate_input.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/annotate_multi_bucket.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/annotate_multi_chrom.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/beds/wes_kit_a.bed +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/beds/wes_kit_b.bed +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/expected_results.json +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/manifest.tsv +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S00.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S01.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S02.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S03.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S04.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S05.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S06.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S07.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S08.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/data/vcfs/S09.vcf +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_annotate.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_batch.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_benchmark.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_bitmaps.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_capture.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_cli.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_cli_docs_consistency.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_compact.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_constants.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_dump.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_haploid_stats.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_info.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_pass_filter.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_ploidy.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_preprocess.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_query.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_sample_filter.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_synth.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_synthetic_stats.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_update.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_update_metadata.py +0 -0
- {afquery-0.2.0 → afquery-0.2.1}/tests/test_warnings.py +0 -0
afquery-0.2.1/Dockerfile
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FROM python:3.11-slim AS builder
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RUN apt-get update && \
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apt-get install -y --no-install-recommends build-essential && \
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rm -rf /var/lib/apt/lists/*
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ARG VERSION
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RUN pip install --no-cache-dir afquery==${VERSION}
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FROM python:3.11-slim
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COPY --from=builder /usr/local/bin/afquery /usr/local/bin/afquery
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ENTRYPOINT ["afquery"]
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__version_tuple__ = version_tuple = (0, 2, 1)
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__commit_id__ = commit_id = None
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afquery-0.2.0/Dockerfile
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