adcd 2.1.2__tar.gz → 2.2.0__tar.gz

adcd-2.2.0/PKG-INFO

@@ -0,0 +1,278 @@
+Metadata-Version: 2.4
+Name: adcd
+Version: 2.2.0
+Summary: Anomaly-Driven Correction Discovery: Physics-Constrained Symbolic Regression for Evolutionary Scientific Discovery
+Author-email: Muhammad Afif Erdita <maeapip10@gmail.com>
+License: MIT
+Project-URL: Homepage, https://zenodo.org/records/20534940
+Project-URL: Repository, https://github.com/apiprdt/PhysicsPaper
+Project-URL: Bug Tracker, https://github.com/apiprdt/PhysicsPaper/issues
+Project-URL: DOI, https://doi.org/10.5281/zenodo.20534940
+Keywords: symbolic regression,physics,machine learning,scientific discovery,JAX
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Topic :: Scientific/Engineering :: Physics
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy>=1.24
+Requires-Dist: scipy>=1.11
+Requires-Dist: sympy>=1.12
+Requires-Dist: jax>=0.4.20
+Requires-Dist: jaxlib>=0.4.20
+Requires-Dist: matplotlib>=3.7
+Requires-Dist: scikit-learn>=1.3
+Requires-Dist: pandas>=1.5
+Provides-Extra: dev
+Requires-Dist: pytest>=7.4; extra == "dev"
+Requires-Dist: pytest-cov>=4.1; extra == "dev"
+Requires-Dist: flake8>=6.1; extra == "dev"
+Requires-Dist: black>=23.0; extra == "dev"
+Provides-Extra: llm
+Requires-Dist: google-generativeai>=0.3; extra == "llm"
+Provides-Extra: all
+Requires-Dist: adcd[dev,llm]; extra == "all"
+Dynamic: license-file
+
+# ADCD — Anomaly-Driven Correction Discovery
+
+<p align="center">
+  <img src="docs/assets/adcd_logo.svg" alt="ADCD Logo" width="160">
+</p>
+
+<p align="center">
+  <strong>Physics-Constrained Symbolic Regression for Evolutionary Scientific Discovery</strong>
+</p>
+
+<p align="center">
+  <a href="https://github.com/apiprdt/PhysicsPaper/actions/workflows/ci.yml"><img src="https://github.com/apiprdt/PhysicsPaper/actions/workflows/ci.yml/badge.svg" alt="CI Status"></a>
+  <a href="https://pypi.org/project/adcd/"><img src="https://img.shields.io/pypi/v/adcd?color=teal" alt="PyPI Version"></a>
+  <a href="https://doi.org/10.5281/zenodo.20534940"><img src="https://img.shields.io/badge/DOI-10.5281%2Fzenodo.20534940-blue" alt="DOI"></a>
+  <a href="LICENSE"><img src="https://img.shields.io/badge/License-MIT-yellow.svg" alt="License: MIT"></a>
+  <a href="https://github.com/apiprdt/PhysicsPaper/actions"><img src="https://img.shields.io/badge/tests-95%20passing-brightgreen" alt="Tests Status"></a>
+  <a href="https://pypi.org/project/adcd/"><img src="https://img.shields.io/badge/python-3.10%2B-blue" alt="Python Support"></a>
+</p>
+
+<p align="center">
+  <a href="https://apiprdt.github.io/PhysicsPaper/"><strong>Explore the Documentation »</strong></a>
+  <br>
+  <br>
+  <a href="#quick-start">Quick Start</a>
+  ·
+  <a href="#key-features">Key Features</a>
+  ·
+  <a href="#benchmark-results">Benchmarks</a>
+  ·
+  <a href="https://colab.research.google.com/github/apiprdt/PhysicsPaper/blob/main/notebooks/adcd_demo.ipynb">Run in Colab</a>
+</p>
+
+> **Science rarely discovers from a blank slate — it corrects.**  
+> ADCD automates the step between *anomaly* and *theory correction*, the same step that led from Newtonian gravity to General Relativity, from Dirac to QED, and from Rayleigh-Jeans to Planck.
+
+<p align="center">
+  <img src="docs/adcd_discovery.gif" alt="ADCD discovery pipeline animation" width="85%">
+</p>
+
+---
+
+## ⚡ Key Features
+
+- **Correction-First Paradigm** — Starts from a known classical law, not a blank slate. Focuses the search space on the discrepancy $\Delta$ between theory and experiment.
+- **Cascaded Physics Gates** — AST complexity, dimensional homogeneity, transcendental guardrails, and asymptotic consistency (ARC) gates screen out unphysical candidates *before* running parameter-fitting.
+- **JAX-Traced L-BFGS-B Optimizer** — Highly optimized parameter-scaled differentiable fitting with multi-restart log-uniform initialization.
+- **BIC Model Selection** — Employs the Bayesian Information Criterion (BIC) to rank models, favoring simpler physical theories over overly complex numerical fits.
+- **Residual Feature Intelligence** — Extracts mathematical features (monotonicity, curvature, oscillation, decay) from residuals to bias proposal templates.
+- **Phase 2: Multivariable Discovery** — Buckingham Π group decomposition + per-variable Sequential ARC + variance-factorization separability detection for multi-input physical laws.
+- **Real-World Validated** — Successfully identifies correct structural classes on Mercury's perihelion (GR), Lamb Shift (QED), Muon g-2 (Schwinger), and Blackbody (Planck).
+
+---
+
+## 📦 Installation
+
+Install the stable package from PyPI:
+
+```bash
+pip install adcd
+```
+
+Or install from source:
+
+```bash
+git clone https://github.com/apiprdt/PhysicsPaper.git
+cd PhysicsPaper
+pip install -e ".[dev]"
+```
+
+Verify your installation:
+```bash
+pytest tests/
+```
+
+---
+
+## 💻 Quick Start
+
+### 1. High-Level Scientific API
+
+Running ADCD on predefined physics benchmarks is extremely simple:
+
+```python
+import adcd
+
+# 1. Load a pre-defined benchmark scenario (e.g. Relativistic Kinetic Energy)
+scenarios = adcd.get_all_scenarios()
+scenario = scenarios[0] 
+
+# 2. Run discovery in a single line!
+result = adcd.discover_correction(scenario, max_iterations=5, proposer="mock")
+
+# 3. View the best fit
+print(f"Discovered correction: {result.best_expr}")       # θ₀ * (v/c)**2
+print(f"LaTeX representation:  {result.export_latex()}")   # \theta_0 \left(\frac{v}{c}\right)^2
+print(f"Parameters:            {result.best_theta}")
+print(f"BIC Score:             {result.best_bic:.2f}")
+
+# 4. Plot residuals
+result.plot_residuals()
+```
+
+### 2. Custom Experimental Datasets
+
+For custom datasets, use the `adcd.fit` function:
+
+```python
+import numpy as np
+import adcd
+
+# Your custom data
+x = np.linspace(1.0, 5.0, 100)
+X = {"x": x}
+y_classical = 2.0 * x
+y_observed  = 2.0 * x + 0.5 * x**2   # True correction is 0.5 * x^2
+
+# Run ADCD
+result = adcd.fit(
+    X=X,
+    y_obs=y_observed,
+    y_classical=y_classical,
+    limit_variable="x",
+    limit_direction="0",
+    correction_mode="additive"
+)
+
+result.summary()
+```
+
+---
+
+## 📊 Benchmark Results
+
+### 1. Standard Benchmark (seed=42, Mock Proposer)
+
+| Scenario | Tier | 0% Noise | 1% Noise | 5% Noise | 10% Noise |
+|----------|------|:--------:|:--------:|:--------:|:---------:|
+| Relativistic KE | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Yukawa Gravity | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Anharmonic Spring | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Screened Coulomb | Cross-Domain | ✓ | ✓ | ✗ | ✗ |
+| Net Radiation | Cross-Domain | ✓ | ✓ | ✓ | ✓ |
+| Nonlinear Drag | Cross-Domain | ✓ | ✓ | ✓ | ✓ |
+| Mystery-A (tanh²) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| Mystery-B (sinc) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| Mystery-C (log-quotient) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| **Overall** | | **100%** | **100%** | **88.9%** | **88.9%** |
+
+### 2. PySR Comparison (fair profile: 100 iterations, 60s timeout)
+
+| Method | 0% Noise | 1% Noise | 5% Noise | 10% Noise |
+|--------|:--------:|:--------:|:--------:|:---------:|
+| **ADCD** (ours, seed=42) | **9/9 (100%)** | **9/9 (100%)** | **8/9 (88.9%)** | **8/9 (88.9%)** |
+| PySR fair | 4/9 (44.4%) | 5/9 (55.6%) | 1/9 (11.1%) | 5/9 (55.6%) |
+
+ADCD outperforms PySR by **+77.8 percentage points** at 5% noise.
+
+### 3. Phase 2: Multivariable Benchmark (v2.2.0)
+
+| Scenario | Variables | ADCD Solved | Notes |
+|----------|-----------|:-----------:|-------|
+| Yukawa Mass-Ratio | m, M, r, r₀ | ✓ | Π groups: m/M, r/r₀ |
+| Turbulent Drag | v, ρ, A, C_D | ✓ | Separable multiplicative |
+| Coupled Oscillator | k, m, Ω, ω₀ | ✗ | Mixed functional form |
+| Van der Waals MV | a, b, P, V, T | ✗ | Requires 3rd Π group |
+| **Overall** | | **2/4 (50%)** | Baseline: 0/4 |
+
+### 4. Real-World Physical Constants
+
+Validation on historical anomalies using physical constants from JPL DE440, NIST, and CODATA:
+
+| Physical Scenario | Discovered Correction | Converged | Class Match | NMSE |
+|---|---|:---:|:---:|:---:|
+| Mercury Perihelion (GR) | `θ₀·vc²` | — | ✓ polynomial | 1.11e-05 |
+| Hydrogen Lamb Shift (QED) | `θ₀(n/θ₁)^(-θ₂)` | ✓ | ✓ power_law | 1.82e-18 |
+| Muon g-2 (Schwinger) | `θ₀(α/π)^θ₁` | ✓ | ✓ polynomial | 7.94e-07 |
+| Blackbody (Planck) | `-1 + e^(-f/θ₁)` | — | ✓ exponential | 2.59e-02 |
+
+---
+
+## 📁 Project Structure
+
+```
+PhysicsPaper/
+├── src/adcd/                       # Installable package
+│   ├── __init__.py                 # Public API (fit, discover_correction)
+│   ├── anomaly_scenarios.py        # 9 standard + 3 blind + 4 multivariable scenarios
+│   ├── arc_scorer.py               # Asymptotic consistency gate (ARC)
+│   ├── buckingham_pi.py            # [Phase 2] Buckingham Π group engine
+│   ├── coarse_evaluator.py         # Coarse numerical pre-filter
+│   ├── correction_orchestrator.py  # Main multi-iteration discovery loop
+│   ├── dimensional_checker.py      # Dimensional homogeneity + transcendental gate
+│   ├── jax_optimizer.py            # JAX L-BFGS-B optimizer
+│   ├── llm_proposer.py             # Mock + Gemini + OpenAI proposers
+│   ├── metrics.py                  # NMSE, BIC, structural classification
+│   ├── multivar_orchestrator.py    # [Phase 2] Multivariable correction pipeline
+│   ├── pipeline.py                 # Stage 1 filter cascade
+│   ├── real_data_loader.py         # Real-world data loading (JPL, NIST, CODATA)
+│   ├── residual_factorizer_v2.py   # [Phase 2] Variance-decomposition separability
+│   ├── result.py                   # CorrectionResult object
+│   └── sequential_arc.py           # [Phase 2] Per-variable Sequential ARC checker
+├── tests/                          # 95 unit + integration tests
+├── paper/                          # LaTeX source (main.tex) + figures
+├── run_correction_discovery.py     # Benchmark runner
+└── README.md                       # This file
+```
+
+---
+
+## 📖 Citing This Work
+
+If you use ADCD in your research, please cite:
+
+```bibtex
+@software{erdita2026adcd,
+  author    = {Erdita, Muhammad Afif},
+  title     = {{Anomaly-Driven Correction Discovery (ADCD): Physics-Constrained
+                Symbolic Regression for Evolutionary Scientific Discovery}},
+  year      = {2026},
+  publisher = {Zenodo},
+  version   = {2.1.3},
+  doi       = {10.5281/zenodo.20534940},
+  url       = {https://doi.org/10.5281/zenodo.20534940}
+}
+```
+
+---
+
+## 👥 AI Disclosure
+
+This project was developed with assistance from Google DeepMind's Antigravity AI assistant. AI was used as a pair-programming and writing tool. All scientific content, experimental design decisions, and intellectual contributions are the author's own.
+
+---
+
+## 📄 License
+
+This project is licensed under the [MIT License](LICENSE).

adcd-2.2.0/README.md

@@ -0,0 +1,237 @@
+# ADCD — Anomaly-Driven Correction Discovery
+
+<p align="center">
+  <img src="docs/assets/adcd_logo.svg" alt="ADCD Logo" width="160">
+</p>
+
+<p align="center">
+  <strong>Physics-Constrained Symbolic Regression for Evolutionary Scientific Discovery</strong>
+</p>
+
+<p align="center">
+  <a href="https://github.com/apiprdt/PhysicsPaper/actions/workflows/ci.yml"><img src="https://github.com/apiprdt/PhysicsPaper/actions/workflows/ci.yml/badge.svg" alt="CI Status"></a>
+  <a href="https://pypi.org/project/adcd/"><img src="https://img.shields.io/pypi/v/adcd?color=teal" alt="PyPI Version"></a>
+  <a href="https://doi.org/10.5281/zenodo.20534940"><img src="https://img.shields.io/badge/DOI-10.5281%2Fzenodo.20534940-blue" alt="DOI"></a>
+  <a href="LICENSE"><img src="https://img.shields.io/badge/License-MIT-yellow.svg" alt="License: MIT"></a>
+  <a href="https://github.com/apiprdt/PhysicsPaper/actions"><img src="https://img.shields.io/badge/tests-95%20passing-brightgreen" alt="Tests Status"></a>
+  <a href="https://pypi.org/project/adcd/"><img src="https://img.shields.io/badge/python-3.10%2B-blue" alt="Python Support"></a>
+</p>
+
+<p align="center">
+  <a href="https://apiprdt.github.io/PhysicsPaper/"><strong>Explore the Documentation »</strong></a>
+  <br>
+  <br>
+  <a href="#quick-start">Quick Start</a>
+  ·
+  <a href="#key-features">Key Features</a>
+  ·
+  <a href="#benchmark-results">Benchmarks</a>
+  ·
+  <a href="https://colab.research.google.com/github/apiprdt/PhysicsPaper/blob/main/notebooks/adcd_demo.ipynb">Run in Colab</a>
+</p>
+
+> **Science rarely discovers from a blank slate — it corrects.**  
+> ADCD automates the step between *anomaly* and *theory correction*, the same step that led from Newtonian gravity to General Relativity, from Dirac to QED, and from Rayleigh-Jeans to Planck.
+
+<p align="center">
+  <img src="docs/adcd_discovery.gif" alt="ADCD discovery pipeline animation" width="85%">
+</p>
+
+---
+
+## ⚡ Key Features
+
+- **Correction-First Paradigm** — Starts from a known classical law, not a blank slate. Focuses the search space on the discrepancy $\Delta$ between theory and experiment.
+- **Cascaded Physics Gates** — AST complexity, dimensional homogeneity, transcendental guardrails, and asymptotic consistency (ARC) gates screen out unphysical candidates *before* running parameter-fitting.
+- **JAX-Traced L-BFGS-B Optimizer** — Highly optimized parameter-scaled differentiable fitting with multi-restart log-uniform initialization.
+- **BIC Model Selection** — Employs the Bayesian Information Criterion (BIC) to rank models, favoring simpler physical theories over overly complex numerical fits.
+- **Residual Feature Intelligence** — Extracts mathematical features (monotonicity, curvature, oscillation, decay) from residuals to bias proposal templates.
+- **Phase 2: Multivariable Discovery** — Buckingham Π group decomposition + per-variable Sequential ARC + variance-factorization separability detection for multi-input physical laws.
+- **Real-World Validated** — Successfully identifies correct structural classes on Mercury's perihelion (GR), Lamb Shift (QED), Muon g-2 (Schwinger), and Blackbody (Planck).
+
+---
+
+## 📦 Installation
+
+Install the stable package from PyPI:
+
+```bash
+pip install adcd
+```
+
+Or install from source:
+
+```bash
+git clone https://github.com/apiprdt/PhysicsPaper.git
+cd PhysicsPaper
+pip install -e ".[dev]"
+```
+
+Verify your installation:
+```bash
+pytest tests/
+```
+
+---
+
+## 💻 Quick Start
+
+### 1. High-Level Scientific API
+
+Running ADCD on predefined physics benchmarks is extremely simple:
+
+```python
+import adcd
+
+# 1. Load a pre-defined benchmark scenario (e.g. Relativistic Kinetic Energy)
+scenarios = adcd.get_all_scenarios()
+scenario = scenarios[0] 
+
+# 2. Run discovery in a single line!
+result = adcd.discover_correction(scenario, max_iterations=5, proposer="mock")
+
+# 3. View the best fit
+print(f"Discovered correction: {result.best_expr}")       # θ₀ * (v/c)**2
+print(f"LaTeX representation:  {result.export_latex()}")   # \theta_0 \left(\frac{v}{c}\right)^2
+print(f"Parameters:            {result.best_theta}")
+print(f"BIC Score:             {result.best_bic:.2f}")
+
+# 4. Plot residuals
+result.plot_residuals()
+```
+
+### 2. Custom Experimental Datasets
+
+For custom datasets, use the `adcd.fit` function:
+
+```python
+import numpy as np
+import adcd
+
+# Your custom data
+x = np.linspace(1.0, 5.0, 100)
+X = {"x": x}
+y_classical = 2.0 * x
+y_observed  = 2.0 * x + 0.5 * x**2   # True correction is 0.5 * x^2
+
+# Run ADCD
+result = adcd.fit(
+    X=X,
+    y_obs=y_observed,
+    y_classical=y_classical,
+    limit_variable="x",
+    limit_direction="0",
+    correction_mode="additive"
+)
+
+result.summary()
+```
+
+---
+
+## 📊 Benchmark Results
+
+### 1. Standard Benchmark (seed=42, Mock Proposer)
+
+| Scenario | Tier | 0% Noise | 1% Noise | 5% Noise | 10% Noise |
+|----------|------|:--------:|:--------:|:--------:|:---------:|
+| Relativistic KE | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Yukawa Gravity | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Anharmonic Spring | Textbook | ✓ | ✓ | ✓ | ✓ |
+| Screened Coulomb | Cross-Domain | ✓ | ✓ | ✗ | ✗ |
+| Net Radiation | Cross-Domain | ✓ | ✓ | ✓ | ✓ |
+| Nonlinear Drag | Cross-Domain | ✓ | ✓ | ✓ | ✓ |
+| Mystery-A (tanh²) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| Mystery-B (sinc) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| Mystery-C (log-quotient) | Synthetic | ✓ | ✓ | ✓ | ✓ |
+| **Overall** | | **100%** | **100%** | **88.9%** | **88.9%** |
+
+### 2. PySR Comparison (fair profile: 100 iterations, 60s timeout)
+
+| Method | 0% Noise | 1% Noise | 5% Noise | 10% Noise |
+|--------|:--------:|:--------:|:--------:|:---------:|
+| **ADCD** (ours, seed=42) | **9/9 (100%)** | **9/9 (100%)** | **8/9 (88.9%)** | **8/9 (88.9%)** |
+| PySR fair | 4/9 (44.4%) | 5/9 (55.6%) | 1/9 (11.1%) | 5/9 (55.6%) |
+
+ADCD outperforms PySR by **+77.8 percentage points** at 5% noise.
+
+### 3. Phase 2: Multivariable Benchmark (v2.2.0)
+
+| Scenario | Variables | ADCD Solved | Notes |
+|----------|-----------|:-----------:|-------|
+| Yukawa Mass-Ratio | m, M, r, r₀ | ✓ | Π groups: m/M, r/r₀ |
+| Turbulent Drag | v, ρ, A, C_D | ✓ | Separable multiplicative |
+| Coupled Oscillator | k, m, Ω, ω₀ | ✗ | Mixed functional form |
+| Van der Waals MV | a, b, P, V, T | ✗ | Requires 3rd Π group |
+| **Overall** | | **2/4 (50%)** | Baseline: 0/4 |
+
+### 4. Real-World Physical Constants
+
+Validation on historical anomalies using physical constants from JPL DE440, NIST, and CODATA:
+
+| Physical Scenario | Discovered Correction | Converged | Class Match | NMSE |
+|---|---|:---:|:---:|:---:|
+| Mercury Perihelion (GR) | `θ₀·vc²` | — | ✓ polynomial | 1.11e-05 |
+| Hydrogen Lamb Shift (QED) | `θ₀(n/θ₁)^(-θ₂)` | ✓ | ✓ power_law | 1.82e-18 |
+| Muon g-2 (Schwinger) | `θ₀(α/π)^θ₁` | ✓ | ✓ polynomial | 7.94e-07 |
+| Blackbody (Planck) | `-1 + e^(-f/θ₁)` | — | ✓ exponential | 2.59e-02 |
+
+---
+
+## 📁 Project Structure
+
+```
+PhysicsPaper/
+├── src/adcd/                       # Installable package
+│   ├── __init__.py                 # Public API (fit, discover_correction)
+│   ├── anomaly_scenarios.py        # 9 standard + 3 blind + 4 multivariable scenarios
+│   ├── arc_scorer.py               # Asymptotic consistency gate (ARC)
+│   ├── buckingham_pi.py            # [Phase 2] Buckingham Π group engine
+│   ├── coarse_evaluator.py         # Coarse numerical pre-filter
+│   ├── correction_orchestrator.py  # Main multi-iteration discovery loop
+│   ├── dimensional_checker.py      # Dimensional homogeneity + transcendental gate
+│   ├── jax_optimizer.py            # JAX L-BFGS-B optimizer
+│   ├── llm_proposer.py             # Mock + Gemini + OpenAI proposers
+│   ├── metrics.py                  # NMSE, BIC, structural classification
+│   ├── multivar_orchestrator.py    # [Phase 2] Multivariable correction pipeline
+│   ├── pipeline.py                 # Stage 1 filter cascade
+│   ├── real_data_loader.py         # Real-world data loading (JPL, NIST, CODATA)
+│   ├── residual_factorizer_v2.py   # [Phase 2] Variance-decomposition separability
+│   ├── result.py                   # CorrectionResult object
+│   └── sequential_arc.py           # [Phase 2] Per-variable Sequential ARC checker
+├── tests/                          # 95 unit + integration tests
+├── paper/                          # LaTeX source (main.tex) + figures
+├── run_correction_discovery.py     # Benchmark runner
+└── README.md                       # This file
+```
+
+---
+
+## 📖 Citing This Work
+
+If you use ADCD in your research, please cite:
+
+```bibtex
+@software{erdita2026adcd,
+  author    = {Erdita, Muhammad Afif},
+  title     = {{Anomaly-Driven Correction Discovery (ADCD): Physics-Constrained
+                Symbolic Regression for Evolutionary Scientific Discovery}},
+  year      = {2026},
+  publisher = {Zenodo},
+  version   = {2.1.3},
+  doi       = {10.5281/zenodo.20534940},
+  url       = {https://doi.org/10.5281/zenodo.20534940}
+}
+```
+
+---
+
+## 👥 AI Disclosure
+
+This project was developed with assistance from Google DeepMind's Antigravity AI assistant. AI was used as a pair-programming and writing tool. All scientific content, experimental design decisions, and intellectual contributions are the author's own.
+
+---
+
+## 📄 License
+
+This project is licensed under the [MIT License](LICENSE).

{adcd-2.1.2 → adcd-2.2.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "adcd"
-version = "2.1.2"
+version = "2.2.0"
 description = "Anomaly-Driven Correction Discovery: Physics-Constrained Symbolic Regression for Evolutionary Scientific Discovery"
 readme = "README.md"
 license = { text = "MIT" }
@@ -30,6 +30,8 @@ dependencies = [
     "jax>=0.4.20",
     "jaxlib>=0.4.20",
     "matplotlib>=3.7",
+    "scikit-learn>=1.3",
+    "pandas>=1.5",
 ]
 
 [project.optional-dependencies]
@@ -51,6 +53,7 @@ Repository = "https://github.com/apiprdt/PhysicsPaper"
 DOI = "https://doi.org/10.5281/zenodo.20534940"
 
 [project.scripts]
+adcd = "adcd.cli:main"
 adcd-discover = "adcd.correction_orchestrator:main_cli"
 
 [tool.setuptools.packages.find]

{adcd-2.1.2 → adcd-2.2.0}/src/adcd/__init__.py

@@ -14,7 +14,7 @@ Quick Start
 >>> print(result.best_expr)
 """
 
-__version__ = "2.1.2"
+__version__ = "2.2.0"
 __author__ = "Muhammad Afif Erdita"
 __email__ = "maeapip10@gmail.com"
 __license__ = "MIT"
@@ -54,6 +54,10 @@ from adcd.jax_optimizer import JAXOptimizer, OptimizationResult
 from adcd.dimensional_checker import ASTValidator, DimensionalChecker
 from adcd.arc_scorer import ARCScorer, AsymptoticRegime, build_arc_regimes
 
+# Bayesian output (Phase 3)
+from adcd.bayesian_ranker import BayesianReranker, BayesianCorrectionOutput
+from adcd.identifiability import IdentifiabilityAnalyzer, IdentifiabilityReport
+
 __all__ = [
     # High-level API
     "fit",
@@ -81,6 +85,11 @@ __all__ = [
     "ARCScorer",
     "AsymptoticRegime",
     "build_arc_regimes",
+    # Bayesian output (Phase 3)
+    "BayesianReranker",
+    "BayesianCorrectionOutput",
+    "IdentifiabilityAnalyzer",
+    "IdentifiabilityReport",
     # Metadata
     "__version__",
 ]