acstools 3.8.0__tar.gz → 3.8.2__tar.gz

acstools-3.8.2/.github/workflows/build.yml

@@ -0,0 +1,72 @@
+name: build
+
+on:
+  pull_request:
+    # We also want this workflow triggered if the 'Build wheels'
+    # label is added or present when PR is updated
+    types:
+      - synchronize
+      - labeled
+  release:
+    types:
+      - released
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+permissions: {}
+
+# NOTE: Cannot use OpenAstronomy workflow due to
+#       https://github.com/OpenAstronomy/github-actions-workflows/issues/168
+jobs:
+  build:
+    if: (github.repository == 'spacetelescope/acstools' && (github.event_name == 'release' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'Build wheels')))
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        with:
+          fetch-tags: true
+          fetch-depth: 0
+          lfs: false
+          persist-credentials: false
+      - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
+        with:
+          python-version: "3.11"
+      - name: Build the package
+        run: |
+          python -m pip install build twine
+          python -m build --sdist --wheel .
+          ls -lh dist
+          python -m twine check --strict dist/*
+      - name: Upload build artifacts
+        if: (github.event_name == 'release' || github.event_name == 'workflow_dispatch')
+        uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0
+        with:
+          name: additional-pylons
+          path: ./dist/
+  publish:
+    if: (github.repository == 'spacetelescope/acstools') && (github.event_name == 'release') && (github.event.action == 'released')
+    needs: [build]
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+      attestations: write
+    # To add required reviewers before deployment,
+    # edit the protection rules in GitHub Settings:
+    # Settings > Environments > pypi > Add required reviewers
+    environment:
+      name: pypi
+      url: https://pypi.org/p/acstools
+    steps:
+      - uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
+        with:
+          pattern: additional-pylons*
+          path: dist/
+          merge-multiple: true
+      - uses: actions/attest-build-provenance@96278af6caaf10aea03fd8d33a09a777ca52d62f # v3.2.0
+        with:
+          subject-path: "dist/*"
+      # To upload to PyPI without a token, add this workflow file as a Trusted Publisher in the project settings on the PyPI website
+      - uses: pypa/gh-action-pypi-publish@ed0c53931b1dc9bd32cbe73a98c7f6766f8a527e # v1.13.0

{acstools-3.8.0 → acstools-3.8.2}/.github/workflows/ci_workflows.yml

@@ -3,6 +3,7 @@ name: CI
 on:
   push:
   pull_request:
+  workflow_dispatch:
   schedule:
     # Weekly Tuesday 6 AM build
     # * is a special character in YAML so you have to quote this string
@@ -21,7 +22,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Check base branch
-      uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd  # v8.0.0
+      uses: actions/github-script@3a2844b7e9c422d3c10d287c895573f7108da1b3  # v9.0.0
       if: github.event_name == 'pull_request'
       with:
         script: |
@@ -35,7 +36,7 @@ jobs:
 
   tests:
     needs: initial_checks
-    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@e97344095b099e1d729fe97429078c9975921d8a  # v2.6.2
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@2835f0cacddf3f8de198db9afdb5354a5cebe0ef  # v2.6.3
     with:
       setenv: |
         jref: "https://ssb.stsci.edu/trds_open/jref"
@@ -57,8 +58,8 @@ jobs:
 
         - name: Python 3.10 with remote data and all dependencies
           linux: py310-test-alldeps
-          posargs: --remote-data -v
+          posargs: --remote-data -v --durations=0
 
         - name: Python 3.14 with remote data and dev dependencies
           linux: py314-test-devdeps
-          posargs: --remote-data -v
+          posargs: --remote-data -v --durations=0

{acstools-3.8.0 → acstools-3.8.2}/.github/workflows/open_actions.yml

@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Label PR
-      uses: actions/labeler@634933edcd8ababfe52f92936142cc22ac488b1b  # v6.0.1
+      uses: actions/labeler@f27b608878404679385c85cfa523b85ccb86e213  # v6.1.0
       if: github.event_name == 'pull_request_target' || github.event_name == 'pull_request'
       with:
         repo-token: "${{ secrets.GITHUB_TOKEN }}"

{acstools-3.8.0 → acstools-3.8.2}/.github/workflows/predeps_workflows.yml

@@ -12,7 +12,7 @@ permissions:
 
 jobs:
   rc_tests:
-    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@e97344095b099e1d729fe97429078c9975921d8a  # v2.6.2
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@2835f0cacddf3f8de198db9afdb5354a5cebe0ef  # v2.6.3
     with:
       setenv: |
         jref: "https://ssb.stsci.edu/trds_open/jref"

{acstools-3.8.0 → acstools-3.8.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: acstools
-Version: 3.8.0
+Version: 3.8.2
 Summary: Python Tools for HST ACS
 Author: Matt Davis, Warren Hack, Norman Grogin, Pey Lian Lim, Sara Ogaz, Leonardo Ubeda, Mihai Cara, David Borncamp, Nathan Miles, Tyler Desjardins, Jenna Ryon, David Stark, Gagandeep Anand, Yotam Cohen
 License-Expression: BSD-3-Clause
@@ -26,7 +26,7 @@ Requires-Dist: PyYAML
 Provides-Extra: all
 Requires-Dist: matplotlib; extra == "all"
 Requires-Dist: scipy; extra == "all"
-Requires-Dist: scikit-image; extra == "all"
+Requires-Dist: scikit-image>=0.11; extra == "all"
 Requires-Dist: stsci.tools; extra == "all"
 Requires-Dist: stsci.imagestats; extra == "all"
 Requires-Dist: photutils; extra == "all"

{acstools-3.8.0 → acstools-3.8.2}/acstools/acsphotcte.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 """
 The ACS Photometric CTE API is a programmatic interface for the
-ACS Photometric CTE Webtool (currently unavailable).
+`ACS Photometric CTE Webtool <https://acsphotometriccte.stsci.edu>`_.
 The API is a cloud-based service that employs a serverless approach on AWS
 with API Gateway and Lambda to compute the photometric CTE corrections
 using the model described in `ACS ISR 2022-06 <https://ui.adsabs.harvard.edu/abs/2022acs..rept....6C/abstract>`_.

{acstools-3.8.0 → acstools-3.8.2}/acstools/satdet.py

@@ -157,11 +157,10 @@ try:
     from skimage.feature import canny
 except ImportError:
     HAS_OPDEP = False
+    SKIMAGE_LT_0_26 = True
 else:
-    if minversion(skimage, '0.11'):
-        HAS_OPDEP = True
-    else:
-        HAS_OPDEP = False
+    HAS_OPDEP = True
+    SKIMAGE_LT_0_26 = not minversion(skimage, "0.26.0")
 
 try:
     import matplotlib.pyplot as plt
@@ -170,8 +169,8 @@ except ImportError:
     warnings.warn('matplotlib not found, plotting is disabled',
                   AstropyUserWarning)
 
-__version__ = '0.3.3'
-__vdate__ = '11-Jul-2017'
+__version__ = '0.3.4'
+__vdate__ = '12-May-2026'
 __author__ = 'David Borncamp, Pey Lian Lim'
 __all__ = ['detsat', 'make_mask']
 
@@ -209,13 +208,16 @@ def _detsat_one(filename, ext, sigma=2.0, low_thresh=0.1, h_thresh=0.5,
 
     # get the edges
     immax = np.max(image)
-    edge = canny(image, sigma=sigma,
+    edge = canny(image, sigma=sigma, mode='constant',
                  low_threshold=immax * low_thresh,
                  high_threshold=immax * h_thresh)
 
     # clean up the small objects, will make less noise
-    morph.remove_small_objects(edge, min_size=small_edge, connectivity=8,
-                               out=edge)
+    if SKIMAGE_LT_0_26:
+        rso_kwargs = {"min_size": small_edge}
+    else:
+        rso_kwargs = {"max_size": small_edge - 1}
+    morph.remove_small_objects(edge, connectivity=8, out=edge, **rso_kwargs)
 
     # create an array of angles from 0 to 180, exactly 0 will get bad columns
     # but it is unlikely that a satellite will be exactly at 0 degrees, so

{acstools-3.8.0 → acstools-3.8.2}/acstools/tests/test_wfc_satdet.py

@@ -15,6 +15,20 @@ pytest.importorskip("skimage")
 class TestSatDet(BaseACSTOOLS):
     detector = 'wfc'
 
+    def test_detsat_runs(self):
+        """Test that satellite trail detection runs without error."""
+        rootname = 'jc8m10syq'
+        inputfile = rootname + '_flc.fits'  # This is modified in-place
+
+        # Prepare input file.
+        self.get_input_file(inputfile, skip_ref=True)
+
+        # Run detsat without multiprocessing but
+        # output is non-deterministic, so we just check roughly.
+        res, err = satdet.detsat(inputfile, chips=[1, 4], n_processes=1, verbose=False)
+        assert list(err) == [], err[('jc8m10syq_flc.fits', 1)]
+        assert sorted(res) == [('jc8m10syq_flc.fits', 1), ('jc8m10syq_flc.fits', 4)]
+
     def test_trail_mask(self):
         """Mask satellite trail on WFC EXT 6."""
 

{acstools-3.8.0 → acstools-3.8.2}/acstools/utils_findsat_mrt.py

@@ -14,12 +14,20 @@ from astropy.nddata import Cutout2D, block_replicate
 from astropy.stats import sigma_clip
 from astropy.table import Table, vstack
 from astropy.utils.exceptions import AstropyUserWarning
+from astropy.utils.introspection import minversion
 
 # check for scikit-image
 try:
+    import skimage
+
+    SKIMAGE_LT_0_27 = not minversion(skimage, "0.26.1.dev")  # 0.27
+
     from skimage import transform
     from skimage.transform._warps import warp
-    from skimage._shared.utils import convert_to_float
+    if SKIMAGE_LT_0_27:
+        from skimage._shared.utils import convert_to_float
+    else:
+        from _skimage2._shared.utils import convert_to_float
 except ImportError as e:
     warnings.warn(f'skimage not installed. MRT calculation will not work: {repr(e)}')  # noqa
 
@@ -1366,7 +1374,7 @@ def create_mrt_line_kernel(width, sigma, outfile=None, shape=(1024, 2048),
         ax.set_title('model image')
 
     # calculate the RT for this model
-    rt = radon(image, circle=False, median=True, fill_value=np.nan,
+    rt = radon(image, theta=theta, circle=False, median=True, fill_value=np.nan,
                processes=processes, return_length=False)
 
     # plot the MRT

{acstools-3.8.0 → acstools-3.8.2}/acstools/version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '3.8.0'
-__version_tuple__ = version_tuple = (3, 8, 0)
+__version__ = version = '3.8.2'
+__version_tuple__ = version_tuple = (3, 8, 2)
 
-__commit_id__ = commit_id = 'ge28e13b49'
+__commit_id__ = commit_id = 'gb8a25088d'

{acstools-3.8.0 → acstools-3.8.2}/acstools.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: acstools
-Version: 3.8.0
+Version: 3.8.2
 Summary: Python Tools for HST ACS
 Author: Matt Davis, Warren Hack, Norman Grogin, Pey Lian Lim, Sara Ogaz, Leonardo Ubeda, Mihai Cara, David Borncamp, Nathan Miles, Tyler Desjardins, Jenna Ryon, David Stark, Gagandeep Anand, Yotam Cohen
 License-Expression: BSD-3-Clause
@@ -26,7 +26,7 @@ Requires-Dist: PyYAML
 Provides-Extra: all
 Requires-Dist: matplotlib; extra == "all"
 Requires-Dist: scipy; extra == "all"
-Requires-Dist: scikit-image; extra == "all"
+Requires-Dist: scikit-image>=0.11; extra == "all"
 Requires-Dist: stsci.tools; extra == "all"
 Requires-Dist: stsci.imagestats; extra == "all"
 Requires-Dist: photutils; extra == "all"

{acstools-3.8.0 → acstools-3.8.2}/acstools.egg-info/SOURCES.txt

@@ -17,11 +17,11 @@ tox.ini
 .github/ISSUE_TEMPLATE/bug_report.md
 .github/ISSUE_TEMPLATE/feature_request.md
 .github/ISSUE_TEMPLATE/question.md
+.github/workflows/build.yml
 .github/workflows/ci_workflows.yml
 .github/workflows/codeql-analysis.yml
 .github/workflows/open_actions.yml
 .github/workflows/predeps_workflows.yml
-.github/workflows/publish-to-pypi.yml
 acstools/__init__.py
 acstools/acs2d.py
 acstools/acs_destripe.py
@@ -47,6 +47,8 @@ acstools.egg-info/dependency_links.txt
 acstools.egg-info/entry_points.txt
 acstools.egg-info/not-zip-safe
 acstools.egg-info/requires.txt
+acstools.egg-info/scm_file_list.json
+acstools.egg-info/scm_version.json
 acstools.egg-info/top_level.txt
 acstools/data/polarizer_tables.yaml
 acstools/data/rt_line_kernel_width15.fits

{acstools-3.8.0 → acstools-3.8.2}/acstools.egg-info/requires.txt

@@ -6,7 +6,7 @@ PyYAML
 [all]
 matplotlib
 scipy
-scikit-image
+scikit-image>=0.11
 stsci.tools
 stsci.imagestats
 photutils

acstools-3.8.2/acstools.egg-info/scm_file_list.json

@@ -0,0 +1,88 @@
+{
+  "files": [
+    "CHANGES.rst",
+    "tox.ini",
+    "pyproject.toml",
+    "LICENSE.md",
+    "README.rst",
+    "CITATION.md",
+    ".bandit.yaml",
+    "MANIFEST.in",
+    "conftest.py",
+    ".gitignore",
+    ".flake8",
+    ".readthedocs.yaml",
+    "CODE_OF_CONDUCT.md",
+    "acstools/findsat_mrt.py",
+    "acstools/__init__.py",
+    "acstools/satdet.py",
+    "acstools/acsphotcte.py",
+    "acstools/acs_destripe.py",
+    "acstools/acsccd.py",
+    "acstools/focus_diverse_epsfs.py",
+    "acstools/utils_findsat_mrt.py",
+    "acstools/acszpt.py",
+    "acstools/acscteforwardmodel.py",
+    "acstools/utils_calib.py",
+    "acstools/acs_destripe_plus.py",
+    "acstools/acssum.py",
+    "acstools/acs2d.py",
+    "acstools/polarization_tools.py",
+    "acstools/acsrej.py",
+    "acstools/calacs.py",
+    "acstools/acscte.py",
+    "acstools/tests/test_wfc_satdet.py",
+    "acstools/tests/helpers.py",
+    "acstools/tests/test_wfc_destripe.py",
+    "acstools/tests/__init__.py",
+    "acstools/tests/test_polarization.py",
+    "acstools/tests/test_wfc_findsat_mrt.py",
+    "acstools/tests/.gitattributes",
+    "acstools/tests/data/truth/ja0x03ojq_flt_ref.fits",
+    "acstools/tests/data/truth/jb5g05ubq_flt_ref.fits",
+    "acstools/tests/data/truth/jc8m32j5q_flc_mask_ref.fits",
+    "acstools/tests/data/truth/jc8m10syq_flc_ref.fits",
+    "acstools/tests/data/truth/jc5001soq_flt_ref.fits",
+    "acstools/tests/data/truth/jc8o04ghq_flt_ref.fits",
+    "acstools/tests/data/truth/jc2z03cvq_blv_tmp_ref.fits",
+    "acstools/tests/data/input/jc8m32j5q_flc.fits",
+    "acstools/tests/data/input/jc8o04ghq_mask2.fits",
+    "acstools/tests/data/input/jc8o04ghq_flt.fits",
+    "acstools/tests/data/input/jc8m10syq_flc.fits",
+    "acstools/tests/data/input/ja0x03ojq_flt.fits",
+    "acstools/tests/data/input/jb5g05ubq_flt.fits",
+    "acstools/tests/data/input/jc8o04ghq_mask1.fits",
+    "acstools/tests/data/input/jc5001soq_flt.fits",
+    "acstools/tests/data/input/jc2z03cvq_blv_tmp.fits",
+    "acstools/data/rt_line_kernel_width3.fits",
+    "acstools/data/rt_line_kernel_width15.fits",
+    "acstools/data/polarizer_tables.yaml",
+    "acstools/data/rt_line_kernel_width7.fits",
+    "doc/Makefile",
+    "doc/make.bat",
+    "doc/source/findsat_mrt.rst",
+    "doc/source/acszpt.rst",
+    "doc/source/acs_destripe.rst",
+    "doc/source/index.rst",
+    "doc/source/calacs.rst",
+    "doc/source/acsphotcte.rst",
+    "doc/source/satdet.rst",
+    "doc/source/focus_diverse_epsfs.rst",
+    "doc/source/polarization_tools.rst",
+    "doc/source/conf.py",
+    "doc/source/utils_calib.rst",
+    "doc/source/_static/stsci_pri_combo_mark_white.png",
+    "doc/source/_templates/.gitignore",
+    ".github/PULL_REQUEST_TEMPLATE.md",
+    ".github/labeler.yml",
+    ".github/dependabot.yml",
+    ".github/ISSUE_TEMPLATE/question.md",
+    ".github/ISSUE_TEMPLATE/bug_report.md",
+    ".github/ISSUE_TEMPLATE/feature_request.md",
+    ".github/workflows/codeql-analysis.yml",
+    ".github/workflows/build.yml",
+    ".github/workflows/predeps_workflows.yml",
+    ".github/workflows/open_actions.yml",
+    ".github/workflows/ci_workflows.yml"
+  ]
+}

acstools-3.8.2/acstools.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "3.8.2",
+  "distance": 0,
+  "node": "gb8a25088dfd55bc143227363dadf3cdcb24c6faa",
+  "dirty": false,
+  "branch": "HEAD",
+  "node_date": "2026-06-24"
+}

{acstools-3.8.0 → acstools-3.8.2}/conftest.py

@@ -14,9 +14,9 @@ except ImportError:
 # Uncomment and customize the following lines to add/remove entries
 # from the list of packages for which version numbers are displayed
 # when running the tests.
-PYTEST_HEADER_MODULES['Astropy'] = 'astropy'
-PYTEST_HEADER_MODULES['beautifulsoup4'] = 'bs4'
+PYTEST_HEADER_MODULES['astropy'] = 'astropy'
 PYTEST_HEADER_MODULES['requests'] = 'requests'
+PYTEST_HEADER_MODULES['scikit-image'] = 'skimage'
 PYTEST_HEADER_MODULES['stsci.tools'] = 'stsci.tools'
 PYTEST_HEADER_MODULES.pop('Pandas', None)
 PYTEST_HEADER_MODULES.pop('h5py', None)

{acstools-3.8.0 → acstools-3.8.2}/pyproject.toml

@@ -51,7 +51,7 @@ Documentation = "https://acstools.readthedocs.io"
 all = [
     "matplotlib",
     "scipy",
-    "scikit-image",
+    "scikit-image>=0.11",
     "stsci.tools",
     "stsci.imagestats",
     "photutils",
@@ -99,8 +99,8 @@ build-backend = "setuptools.build_meta"
 [tool.setuptools_scm]
 version_file = "acstools/version.py"
 
-[tool.pytest.ini_options]
-minversion = "5"
+[tool.pytest]
+minversion = "9"
 norecursedirs = [
     "build",
     "doc/build",
@@ -115,4 +115,5 @@ filterwarnings = [
     "error",
     "ignore:numpy\\.ndarray size changed:RuntimeWarning",
     "ignore:unclosed file:ResourceWarning",
-]
+    "ignore:.*skimage\\.feature\\.canny.* is deprecated",
+]

acstools-3.8.0/.github/workflows/publish-to-pypi.yml

@@ -1,64 +0,0 @@
-name: Wheel building
-
-on:
-  pull_request:
-    # We also want this workflow triggered if the 'Build wheels'
-    # label is added or present when PR is updated
-    types:
-      - synchronize
-      - labeled
-  push:
-    branches:
-      - master
-    tags:
-      - '*'
-
-concurrency:
-  group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
-
-# NOTE: Cannot use OpenAstronomy workflow due to
-#       https://github.com/OpenAstronomy/github-actions-workflows/issues/168
-jobs:
-  build_and_publish:
-    # This job builds the wheels and publishes them to PyPI for all
-    # tags. For PRs with the "Build wheels" label, wheels are built,
-    # but are not uploaded to PyPI.
-
-    permissions:
-      contents: none
-
-    runs-on: ubuntu-latest
-    if: (github.repository == 'spacetelescope/acstools' && (github.event_name == 'push' ||  contains(github.event.pull_request.labels.*.name, 'Build wheels')))
-
-    steps:
-    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd  # v6.0.2
-      with:
-        fetch-depth: 0
-
-    - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405  # v6.2.0
-      with:
-        python-version: '3.11'
-
-    - name: Install python-build and twine
-      run: python -m pip install build "twine>=3.3"
-
-    - name: Build package
-      run: python -m build --sdist --wheel .
-
-    - name: List result
-      run: ls -l dist
-
-    - name: Check dist
-      run: python -m twine check --strict dist/*
-
-    # FOR DEBUGGING ONLY: repository_url (TestPyPI) and verbose;
-    # Use appropriate token if debugging with TestPyPI
-    - name: Publish distribution 📦 to PyPI
-      if: (startsWith(github.ref, 'refs/tags/') && github.event_name == 'push')
-      uses: pypa/gh-action-pypi-publish@ed0c53931b1dc9bd32cbe73a98c7f6766f8a527e  # v1.13.0
-      with:
-        user: __token__
-        password: ${{ secrets.PYPI_TOKEN }}
-        #repository_url: https://test.pypi.org/legacy/
-        #verbose: true