abbacus-cortex 0.2.1__tar.gz → 0.2.2__tar.gz

abbacus_cortex-0.2.2/LICENSE

@@ -0,0 +1,69 @@
+Business Source License 1.1
+
+Parameters
+
+Licensor:             Abbacus Group
+
+Licensed Work:        Cortex v0.2.1
+                      The Licensed Work is the Cortex software, available at
+                      https://github.com/abbacusgroup/Cortex
+
+Additional Use Grant: You may use the Licensed Work for your internal
+                      business purposes.
+
+Change Date:          2030-04-11
+
+Change License:       MIT License
+
+For information about alternative licensing arrangements for the Licensed Work,
+please contact the Licensor.
+
+Notice
+
+Business Source License 1.1
+
+License text copyright (c) 2017 MariaDB Corporation Ab, All Rights Reserved.
+"Business Source License" is a trademark of MariaDB Corporation Ab.
+
+-----------------------------------------------------------------------------
+
+Terms
+
+The Licensor hereby grants you the right to copy, modify, create derivative
+works, redistribute, and make non-production use of the Licensed Work. The
+Licensor may make an Additional Use Grant, above, permitting limited production
+use.
+
+Effective on the Change Date, or the fourth anniversary of the first publicly
+available distribution of a specific version of the Licensed Work under this
+License, whichever comes first, the Licensor hereby grants you rights under the
+terms of the Change License, and the rights granted in the paragraph above
+terminate.
+
+If your use of the Licensed Work does not comply with the requirements currently
+in effect as described in this License, you must purchase a commercial license
+from the Licensor, its affiliated entities, or authorized resellers, or you must
+refrain from using the Licensed Work.
+
+All copies of the original and modified Licensed Work, and derivative works of
+the Licensed Work, are subject to this License. This License applies separately
+for each version of the Licensed Work and the Change Date may vary for each
+version of the Licensed Work released by Licensor.
+
+You must conspicuously display this License on each original or modified copy of
+the Licensed Work. If you receive the Licensed Work in original or modified form
+from a third party, the terms and conditions set forth in this License apply to
+your use of that work.
+
+Any use of the Licensed Work in violation of this License will automatically
+terminate your rights under this License for the current and all other versions
+of the Licensed Work.
+
+This License does not grant you any right in any trademark or logo of Licensor
+or its affiliates (provided that you may use a trademark or logo of Licensor as
+expressly required by this License).
+
+TO THE EXTENT PERMITTED BY APPLICABLE LAW, THE LICENSED WORK IS PROVIDED ON AN
+"AS IS" BASIS. LICENSOR HEREBY DISCLAIMS ALL WARRANTIES AND CONDITIONS, EXPRESS
+OR IMPLIED, INCLUDING (WITHOUT LIMITATION) WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE, NON-INFRINGEMENT, AND TITLE.

abbacus_cortex-0.2.1/README.md → abbacus_cortex-0.2.2/PKG-INFO

@@ -1,9 +1,60 @@
+Metadata-Version: 2.4
+Name: abbacus-cortex
+Version: 0.2.2
+Summary: Cognitive knowledge system with formal ontology, reasoning, and intelligence serving
+Keywords: knowledge-graph,knowledge-management,mcp,reasoning,ontology,rdf,ai,semantic-search,llm
+Author: Fabrizzio Silveira
+Author-email: Fabrizzio Silveira <74255714+grayisnotacolor@users.noreply.github.com>
+License-Expression: BUSL-1.1
+License-File: LICENSE
+Classifier: Development Status :: 4 - Beta
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: License :: Other/Proprietary License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Database :: Database Engines/Servers
+Classifier: Typing :: Typed
+Requires-Dist: pyoxigraph>=0.4
+Requires-Dist: aiosqlite>=0.20
+Requires-Dist: fastapi>=0.115
+Requires-Dist: uvicorn[standard]>=0.34
+Requires-Dist: typer>=0.15
+Requires-Dist: jinja2>=3.1
+Requires-Dist: python-dotenv>=1.1
+Requires-Dist: bcrypt>=4.2
+Requires-Dist: mcp>=1.6
+Requires-Dist: httpx>=0.28
+Requires-Dist: litellm>=1.60
+Requires-Dist: sentence-transformers>=3.4 ; extra == 'embeddings'
+Requires-Python: >=3.12
+Project-URL: Homepage, https://github.com/abbacusgroup/Cortex
+Project-URL: Repository, https://github.com/abbacusgroup/Cortex
+Project-URL: Documentation, https://github.com/abbacusgroup/Cortex#readme
+Project-URL: Changelog, https://github.com/abbacusgroup/Cortex/blob/main/CHANGELOG.md
+Project-URL: Bug Tracker, https://github.com/abbacusgroup/Cortex/issues
+Provides-Extra: embeddings
+Description-Content-Type: text/markdown
+
 # Cortex
 
+<!-- mcp-name: io.github.abbacusgroup/cortex -->
+
+[![CI](https://github.com/abbacusgroup/Cortex/actions/workflows/test.yml/badge.svg)](https://github.com/abbacusgroup/Cortex/actions/workflows/test.yml)
+[![PyPI](https://img.shields.io/pypi/v/abbacus-cortex)](https://pypi.org/project/abbacus-cortex/)
+[![Python](https://img.shields.io/pypi/pyversions/abbacus-cortex)](https://pypi.org/project/abbacus-cortex/)
+[![License](https://img.shields.io/badge/license-BUSL--1.1-blue)](LICENSE)
+
 Cognitive knowledge system with formal ontology, reasoning, and intelligence serving.
 
 Cortex captures knowledge objects (decisions, lessons, fixes, sessions, research, ideas), classifies them with an OWL-RL ontology, discovers relationships, reasons over the graph, and serves intelligence through hybrid retrieval.
 
+![Dashboard](docs/dashboard/dashboard4.png)
+
+![Knowledge Graph](docs/dashboard/dashboard2.png)
+
 ## Install
 
 ```bash
@@ -187,6 +238,20 @@ decision, lesson, fix, session, research, source, synthesis, idea
 
 causedBy, contradicts (symmetric), supports, supersedes (transitive), dependsOn, ledTo (inverse of causedBy), implements, mentions
 
+## Privacy
+
+Cortex stores all data locally. No telemetry, no analytics, no phone-home. If you configure an LLM provider (via `CORTEX_LLM_API_KEY`), object content may be sent to that provider for classification and reasoning. Embeddings are computed locally by default using `sentence-transformers`.
+
 ## License
 
-Copyright Abbacus Group.
+Copyright (c) 2026 Abbacus Group. Licensed under the [Business Source License 1.1](LICENSE).
+
+- **Additional Use Grant:** You may use the Licensed Work for your internal business purposes.
+- **Change Date:** 2030-04-11
+- **Change License:** MIT
+
+After the Change Date, this software converts to the MIT license.
+
+## Trademark Notice
+
+Cortex is a project of Abbacus Group and is not affiliated with any other product named Cortex.

abbacus_cortex-0.2.1/PKG-INFO → abbacus_cortex-0.2.2/README.md

@@ -1,32 +1,20 @@
-Metadata-Version: 2.3
-Name: abbacus-cortex
-Version: 0.2.1
-Summary: Cognitive knowledge system with formal ontology, reasoning, and intelligence serving
-Author: Fabrizzio Silveira
-Author-email: Fabrizzio Silveira <74255714+grayisnotacolor@users.noreply.github.com>
-Requires-Dist: pyoxigraph>=0.4
-Requires-Dist: aiosqlite>=0.20
-Requires-Dist: fastapi>=0.115
-Requires-Dist: uvicorn[standard]>=0.34
-Requires-Dist: typer>=0.15
-Requires-Dist: jinja2>=3.1
-Requires-Dist: python-dotenv>=1.1
-Requires-Dist: bcrypt>=4.2
-Requires-Dist: mcp>=1.6
-Requires-Dist: httpx>=0.28
-Requires-Dist: sentence-transformers>=3.4 ; extra == 'embeddings'
-Requires-Dist: litellm>=1.60 ; extra == 'llm'
-Requires-Python: >=3.12
-Provides-Extra: embeddings
-Provides-Extra: llm
-Description-Content-Type: text/markdown
-
 # Cortex
 
+<!-- mcp-name: io.github.abbacusgroup/cortex -->
+
+[![CI](https://github.com/abbacusgroup/Cortex/actions/workflows/test.yml/badge.svg)](https://github.com/abbacusgroup/Cortex/actions/workflows/test.yml)
+[![PyPI](https://img.shields.io/pypi/v/abbacus-cortex)](https://pypi.org/project/abbacus-cortex/)
+[![Python](https://img.shields.io/pypi/pyversions/abbacus-cortex)](https://pypi.org/project/abbacus-cortex/)
+[![License](https://img.shields.io/badge/license-BUSL--1.1-blue)](LICENSE)
+
 Cognitive knowledge system with formal ontology, reasoning, and intelligence serving.
 
 Cortex captures knowledge objects (decisions, lessons, fixes, sessions, research, ideas), classifies them with an OWL-RL ontology, discovers relationships, reasons over the graph, and serves intelligence through hybrid retrieval.
 
+![Dashboard](docs/dashboard/dashboard4.png)
+
+![Knowledge Graph](docs/dashboard/dashboard2.png)
+
 ## Install
 
 ```bash
@@ -210,6 +198,20 @@ decision, lesson, fix, session, research, source, synthesis, idea
 
 causedBy, contradicts (symmetric), supports, supersedes (transitive), dependsOn, ledTo (inverse of causedBy), implements, mentions
 
+## Privacy
+
+Cortex stores all data locally. No telemetry, no analytics, no phone-home. If you configure an LLM provider (via `CORTEX_LLM_API_KEY`), object content may be sent to that provider for classification and reasoning. Embeddings are computed locally by default using `sentence-transformers`.
+
 ## License
 
-Copyright Abbacus Group.
+Copyright (c) 2026 Abbacus Group. Licensed under the [Business Source License 1.1](LICENSE).
+
+- **Additional Use Grant:** You may use the Licensed Work for your internal business purposes.
+- **Change Date:** 2030-04-11
+- **Change License:** MIT
+
+After the Change Date, this software converts to the MIT license.
+
+## Trademark Notice
+
+Cortex is a project of Abbacus Group and is not affiliated with any other product named Cortex.

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/pyproject.toml

@@ -1,12 +1,28 @@
 [project]
 name = "abbacus-cortex"
-version = "0.2.1"
+version = "0.2.2"
 description = "Cognitive knowledge system with formal ontology, reasoning, and intelligence serving"
 readme = "README.md"
 authors = [
     { name = "Fabrizzio Silveira", email = "74255714+grayisnotacolor@users.noreply.github.com" }
 ]
+license = "BUSL-1.1"
+license-files = ["LICENSE"]
 requires-python = ">=3.12"
+keywords = ["knowledge-graph", "knowledge-management", "mcp", "reasoning", "ontology", "rdf", "ai", "semantic-search", "llm"]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Environment :: Console",
+    "Intended Audience :: Developers",
+    "License :: Other/Proprietary License",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Topic :: Scientific/Engineering :: Artificial Intelligence",
+    "Topic :: Database :: Database Engines/Servers",
+    "Typing :: Typed",
+]
+
 dependencies = [
     # Graph / Ontology
     "pyoxigraph>=0.4",
@@ -27,11 +43,19 @@ dependencies = [
     "mcp>=1.6",
     # HTTP client
     "httpx>=0.28",
+    # LLM (provider-agnostic: Anthropic, OpenAI, Ollama, etc.)
+    "litellm>=1.60",
 ]
 
+[project.urls]
+Homepage = "https://github.com/abbacusgroup/Cortex"
+Repository = "https://github.com/abbacusgroup/Cortex"
+Documentation = "https://github.com/abbacusgroup/Cortex#readme"
+Changelog = "https://github.com/abbacusgroup/Cortex/blob/main/CHANGELOG.md"
+"Bug Tracker" = "https://github.com/abbacusgroup/Cortex/issues"
+
 [project.optional-dependencies]
 embeddings = ["sentence-transformers>=3.4"]
-llm = ["litellm>=1.60"]
 
 [project.scripts]
 cortex = "cortex.cli.main:app"
@@ -57,11 +81,12 @@ build-backend = "uv_build"
 build-backend.module-name = "cortex"
 
 [tool.pytest.ini_options]
-testpaths = ["tests"]
+testpaths = ["tests", "benchmarks"]
 asyncio_mode = "auto"
 pythonpath = ["src"]
 markers = [
     "slow: end-to-end tests that spawn subprocesses (skipped in fast loops)",
+    "bench: benchmark suite (run with -m bench)",
 ]
 
 [tool.ruff]

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/src/cortex/__init__.py

@@ -1,3 +1,3 @@
 """Cortex — Cognitive knowledge system."""
 
-__version__ = "0.2.1"
+__version__ = "0.2.2"

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/src/cortex/cli/backup.py

@@ -21,13 +21,15 @@ from cortex.core.config import CortexConfig
 # ---------------------------------------------------------------------------
 
 # Relative paths (from data_dir) to exclude from backup archives.
-_EXCLUDE_EXACT = frozenset({
-    "graph.db.lock",
-    "graph.db/LOCK",
-    ".env",
-    "cortex.db-wal",
-    "cortex.db-shm",
-})
+_EXCLUDE_EXACT = frozenset(
+    {
+        "graph.db.lock",
+        "graph.db/LOCK",
+        ".env",
+        "cortex.db-wal",
+        "cortex.db-shm",
+    }
+)
 
 _EXCLUDE_SUFFIXES = (".log", ".err", ".log.old", ".err.old")
 

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/src/cortex/cli/install.py

@@ -294,6 +294,13 @@ def _unit_name(label: str) -> str:
 
 def _install_systemd_unit(label: str, content: str) -> Path:
     """Write a unit file and enable it."""
+    if not shutil.which("systemctl"):
+        typer.echo(
+            "  Error: systemctl not found — systemd is required for service install on Linux"
+        )
+        typer.echo("  You can still run Cortex manually: cortex serve --transport mcp-http")
+        raise typer.Exit(1)
+
     _SYSTEMD_USER_DIR.mkdir(parents=True, exist_ok=True)
     unit_path = _SYSTEMD_USER_DIR / _unit_name(label)
     unit_name = unit_path.name
@@ -322,11 +329,12 @@ def _uninstall_systemd_unit(label: str) -> None:
     if not unit_path.exists():
         typer.echo(f"  {unit_name}: not installed")
         return
-    subprocess.run(
-        ["systemctl", "--user", "disable", "--now", unit_name],
-        check=False,
-        capture_output=True,
-    )
+    if shutil.which("systemctl"):
+        subprocess.run(
+            ["systemctl", "--user", "disable", "--now", unit_name],
+            check=False,
+            capture_output=True,
+        )
     unit_path.unlink()
     subprocess.run(
         ["systemctl", "--user", "daemon-reload"],
@@ -357,16 +365,12 @@ def do_install(config: CortexConfig, service: str) -> None:
             if svc == "mcp":
                 _install_launchagent(_MCP_LABEL, render_mcp_plist(config, binary))
             else:
-                _install_launchagent(
-                    _DASHBOARD_LABEL, render_dashboard_plist(config, binary)
-                )
+                _install_launchagent(_DASHBOARD_LABEL, render_dashboard_plist(config, binary))
         else:
             if svc == "mcp":
                 _install_systemd_unit(_MCP_LABEL, render_mcp_unit(config, binary))
             else:
-                _install_systemd_unit(
-                    _DASHBOARD_LABEL, render_dashboard_unit(config, binary)
-                )
+                _install_systemd_unit(_DASHBOARD_LABEL, render_dashboard_unit(config, binary))
 
     typer.echo()
     if "mcp" in services:

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/src/cortex/cli/main.py

@@ -574,7 +574,9 @@ def status() -> None:
         store = _get_store(must_init=False)
         stats = store.status()
 
-    typer.echo("Cortex v0.1.0")
+    from cortex import __version__
+
+    typer.echo(f"Cortex v{__version__}")
     typer.echo(f"  Initialized: {stats['initialized']}")
     typer.echo(f"  Documents:   {stats['sqlite_total']}")
     typer.echo(f"  Triples:     {stats['graph_triples']}")
@@ -594,9 +596,7 @@ def context(
 ) -> None:
     """Get a briefing (summaries only) for a topic."""
     if _use_mcp():
-        briefs = _mcp_call_or_exit(
-            lambda: _get_mcp_client().context(topic=topic, limit=limit)
-        )
+        briefs = _mcp_call_or_exit(lambda: _get_mcp_client().context(topic=topic, limit=limit))
     else:
         store = _get_store()
         from cortex.retrieval.engine import RetrievalEngine
@@ -624,9 +624,7 @@ def dossier(
 ) -> None:
     """Build an intelligence dossier around an entity or topic."""
     if _use_mcp():
-        result = _mcp_call_or_exit(
-            lambda: _get_mcp_client().dossier(topic=topic)
-        )
+        result = _mcp_call_or_exit(lambda: _get_mcp_client().dossier(topic=topic))
     else:
         store = _get_store()
         from cortex.retrieval.presenters import DossierPresenter
@@ -671,9 +669,7 @@ def graph(
 ) -> None:
     """Show an object's relationships and graph neighborhood."""
     if _use_mcp():
-        result = _mcp_call_or_exit(
-            lambda: _get_mcp_client().graph(obj_id=obj_id)
-        )
+        result = _mcp_call_or_exit(lambda: _get_mcp_client().graph(obj_id=obj_id))
         chain = result.get("causal_chain", [])
         timeline = result.get("evolution", [])
         rels = result.get("relationships", [])
@@ -719,9 +715,7 @@ def synthesize(
     """Generate a synthesis of recent knowledge."""
     if _use_mcp():
         result = _mcp_call_or_exit(
-            lambda: _get_mcp_client().synthesize(
-                period_days=period, project=project or ""
-            )
+            lambda: _get_mcp_client().synthesize(period_days=period, project=project or "")
         )
     else:
         store = _get_store()
@@ -966,6 +960,7 @@ def serve(
     """
     if transport == "stdio":
         from cortex.transport.mcp.server import run_stdio
+
         try:
             run_stdio()
         except StoreLockedError as e:
@@ -973,6 +968,7 @@ def serve(
             raise typer.Exit(1) from e
     elif transport == "mcp-http":
         from cortex.transport.mcp.server import run_http
+
         typer.echo(f"Cortex MCP (streamable-http) at http://{host}:{port}/mcp")
         if parent_watchdog:
             _start_parent_watchdog()
@@ -1096,6 +1092,7 @@ def setup(
         typer.echo(f"  LLM: {config.llm_model}")
         try:
             from cortex.services.llm import LLMClient
+
             llm = LLMClient(config)
             llm.complete("Say 'connected' in one word.")
             typer.echo("  LLM: Connected")
@@ -1378,15 +1375,12 @@ def dashboard(
 
         # --spawn-mcp: launch the MCP server as a subprocess and wait.
         typer.secho(
-            f"MCP server at {config.mcp_server_url} unreachable — "
-            f"spawning one via --spawn-mcp…",
+            f"MCP server at {config.mcp_server_url} unreachable — spawning one via --spawn-mcp…",
             fg=typer.colors.YELLOW,
             err=True,
         )
         try:
-            spawned_proc = _spawn_mcp_subprocess(
-                config.mcp_server_url, config.data_dir
-            )
+            spawned_proc = _spawn_mcp_subprocess(config.mcp_server_url, config.data_dir)
         except RuntimeError as spawn_err:
             typer.secho(
                 f"Failed to spawn MCP subprocess: {spawn_err}",
@@ -1506,9 +1500,7 @@ def run_pipeline_cmd(
         raise typer.Exit(1)
 
     if _use_mcp():
-        result = _mcp_call_or_exit(
-            lambda: _get_mcp_client().pipeline(obj_id=obj_id)
-        )
+        result = _mcp_call_or_exit(lambda: _get_mcp_client().pipeline(obj_id=obj_id))
         if "error" in result:
             typer.echo(result["error"], err=True)
             raise typer.Exit(1)
@@ -1635,15 +1627,10 @@ def doctor_unlock(
     if dry_run:
         typer.echo("Dry run — no files will be removed.")
         typer.echo(f"  marker: {marker_path} (exists={marker_path.exists()})")
-        typer.echo(
-            f"  rocksdb LOCK: {rocksdb_lock} (exists={rocksdb_lock.exists()})"
-        )
+        typer.echo(f"  rocksdb LOCK: {rocksdb_lock} (exists={rocksdb_lock.exists()})")
         if holder_pid is not None:
             alive = _pid_alive(holder_pid)
-            typer.echo(
-                f"  holder PID: {holder_pid} "
-                f"({'alive' if alive else 'dead'})"
-            )
+            typer.echo(f"  holder PID: {holder_pid} ({'alive' if alive else 'dead'})")
             if holder_cmdline:
                 typer.echo(f"  holder cmdline: {holder_cmdline}")
         raise typer.Exit(0)
@@ -1689,8 +1676,7 @@ def doctor_unlock(
             rocksdb_lock.unlink(missing_ok=True)
             removed.append(str(rocksdb_lock))
         typer.secho(
-            f"Unlocked. No holder PID known; removed: "
-            f"{', '.join(removed) or 'nothing'}",
+            f"Unlocked. No holder PID known; removed: {', '.join(removed) or 'nothing'}",
             fg=typer.colors.GREEN,
         )
         raise typer.Exit(0)
@@ -1703,9 +1689,7 @@ def doctor_unlock(
             and holder_cmdline is not None
             and live_cmdline != holder_cmdline
         )
-        cmdline_unknown = (
-            live_cmdline is None and holder_cmdline is not None
-        )
+        cmdline_unknown = live_cmdline is None and holder_cmdline is not None
         if is_reuse:
             typer.secho(
                 f"PID {holder_pid} is alive but its cmdline does NOT match "
@@ -1727,14 +1711,12 @@ def doctor_unlock(
                 err=True,
             )
             typer.echo(
-                "  If you are sure the marker is stale, run: "
-                "cortex doctor unlock --force",
+                "  If you are sure the marker is stale, run: cortex doctor unlock --force",
                 err=True,
             )
         else:
             typer.secho(
-                f"PID {holder_pid} is still running — refusing to unlock "
-                f"a live holder.",
+                f"PID {holder_pid} is still running — refusing to unlock a live holder.",
                 fg=typer.colors.RED,
                 err=True,
             )
@@ -1757,8 +1739,7 @@ def doctor_unlock(
         raise typer.Exit(1)
 
     typer.secho(
-        f"Unlocked. Holder PID {holder_pid} was dead; removed "
-        f"{marker_path} and {rocksdb_lock}.",
+        f"Unlocked. Holder PID {holder_pid} was dead; removed {marker_path} and {rocksdb_lock}.",
         fg=typer.colors.GREEN,
     )
 
@@ -1777,7 +1758,7 @@ _LAUNCHAGENT_LOG_FILENAMES = (
 )
 
 # Size thresholds for the summary status badge.
-_LOG_SIZE_GREEN_MAX = 10 * 1024 * 1024   # 10 MB
+_LOG_SIZE_GREEN_MAX = 10 * 1024 * 1024  # 10 MB
 _LOG_SIZE_YELLOW_MAX = 100 * 1024 * 1024  # 100 MB
 
 
@@ -1840,9 +1821,7 @@ def _summarize_logs(log_paths: list[Path]) -> None:
         stat = path.stat()
         size_bytes = stat.st_size
         lines = _count_lines(path)
-        mtime = datetime.datetime.fromtimestamp(stat.st_mtime).strftime(
-            "%Y-%m-%d %H:%M:%S"
-        )
+        mtime = datetime.datetime.fromtimestamp(stat.st_mtime).strftime("%Y-%m-%d %H:%M:%S")
         color = _log_status_color(size_bytes)
         label = _log_status_label(size_bytes)
         typer.echo(
@@ -2015,9 +1994,7 @@ def doctor_check() -> None:
     try:
         fts = content.fts_integrity_check()
         if fts["ok"]:
-            typer.echo(
-                f"  FTS5 index: OK ({fts['documents_count']} documents indexed)"
-            )
+            typer.echo(f"  FTS5 index: OK ({fts['documents_count']} documents indexed)")
         else:
             all_ok = False
             typer.secho(
@@ -2042,8 +2019,7 @@ def doctor_check() -> None:
             else:
                 all_ok = False
                 typer.secho(
-                    f"  Reasoner:   WARN — {fixpoint['total_pending']} "
-                    "triples pending inference",
+                    f"  Reasoner:   WARN — {fixpoint['total_pending']} triples pending inference",
                     fg=typer.colors.YELLOW,
                 )
                 typer.echo("              Run `cortex doctor repair` to reach fixpoint.")
@@ -2113,9 +2089,7 @@ def doctor_repair() -> None:
     content = ContentStore(path=config.sqlite_db_path)
     try:
         result = content.fts_rebuild()
-        typer.echo(
-            f"  FTS5 index: rebuilt ({result['documents_count']} documents reindexed)"
-        )
+        typer.echo(f"  FTS5 index: rebuilt ({result['documents_count']} documents reindexed)")
     finally:
         content.close()
 

{abbacus_cortex-0.2.1 → abbacus_cortex-0.2.2}/src/cortex/core/constants.py

@@ -19,36 +19,42 @@ DEFAULT_HOST = "127.0.0.1"
 DEFAULT_PORT = 1314
 
 # Knowledge object types (must match ontology classes)
-KNOWLEDGE_TYPES = frozenset({
-    "decision",
-    "lesson",
-    "fix",
-    "session",
-    "research",
-    "source",
-    "synthesis",
-    "idea",
-})
+KNOWLEDGE_TYPES = frozenset(
+    {
+        "decision",
+        "lesson",
+        "fix",
+        "session",
+        "research",
+        "source",
+        "synthesis",
+        "idea",
+    }
+)
 
 # Relationship types (must match ontology object properties)
-RELATIONSHIP_TYPES = frozenset({
-    "causedBy",
-    "contradicts",
-    "supports",
-    "supersedes",
-    "dependsOn",
-    "ledTo",
-    "implements",
-    "mentions",
-})
+RELATIONSHIP_TYPES = frozenset(
+    {
+        "causedBy",
+        "contradicts",
+        "supports",
+        "supersedes",
+        "dependsOn",
+        "ledTo",
+        "implements",
+        "mentions",
+    }
+)
 
 # Entity subtypes
-ENTITY_TYPES = frozenset({
-    "technology",
-    "project",
-    "pattern",
-    "concept",
-})
+ENTITY_TYPES = frozenset(
+    {
+        "technology",
+        "project",
+        "pattern",
+        "concept",
+    }
+)
 
 # Tiers
 TIERS = frozenset({"archive", "recall", "reflex"})