aamutils 0.0.2__tar.gz → 0.0.3__tar.gz

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Files changed (29) hide show
  1. {aamutils-0.0.2 → aamutils-0.0.3}/PKG-INFO +1 -1
  2. {aamutils-0.0.2 → aamutils-0.0.3}/benchmark.py +12 -2
  3. {aamutils-0.0.2 → aamutils-0.0.3}/pyproject.toml +1 -1
  4. {aamutils-0.0.2 → aamutils-0.0.3}/.github/workflows/publish-package.yml +0 -0
  5. {aamutils-0.0.2 → aamutils-0.0.3}/.github/workflows/test-and-lint.yml +0 -0
  6. {aamutils-0.0.2 → aamutils-0.0.3}/.gitignore +0 -0
  7. {aamutils-0.0.2 → aamutils-0.0.3}/LICENSE +0 -0
  8. {aamutils-0.0.2 → aamutils-0.0.3}/Makefile +0 -0
  9. {aamutils-0.0.2 → aamutils-0.0.3}/README.md +0 -0
  10. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/__init__.py +0 -0
  11. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/__main__.py +0 -0
  12. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/algorithm/__init__.py +0 -0
  13. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/algorithm/aaming.py +0 -0
  14. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/algorithm/ilp.py +0 -0
  15. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/cmd/__init__.py +0 -0
  16. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/cmd/expanding.py +0 -0
  17. {aamutils-0.0.2 → aamutils-0.0.3}/aamutils/utils.py +0 -0
  18. {aamutils-0.0.2 → aamutils-0.0.3}/conf.py +0 -0
  19. {aamutils-0.0.2 → aamutils-0.0.3}/data/test_dataset.json +0 -0
  20. {aamutils-0.0.2 → aamutils-0.0.3}/doc/getting_started.rst +0 -0
  21. {aamutils-0.0.2 → aamutils-0.0.3}/doc/reference.rst +0 -0
  22. {aamutils-0.0.2 → aamutils-0.0.3}/index.rst +0 -0
  23. {aamutils-0.0.2 → aamutils-0.0.3}/lint.sh +0 -0
  24. {aamutils-0.0.2 → aamutils-0.0.3}/make.bat +0 -0
  25. {aamutils-0.0.2 → aamutils-0.0.3}/requirements.txt +0 -0
  26. {aamutils-0.0.2 → aamutils-0.0.3}/test/__init__.py +0 -0
  27. {aamutils-0.0.2 → aamutils-0.0.3}/test/algorithm/__init__.py +0 -0
  28. {aamutils-0.0.2 → aamutils-0.0.3}/test/algorithm/test_aaming.py +0 -0
  29. {aamutils-0.0.2 → aamutils-0.0.3}/test/algorithm/test_ilp.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: aamutils
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- Version: 0.0.2
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+ Version: 0.0.3
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  Summary: Collection of atom-atom-mapping utility functions.
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  Project-URL: homepage, https://github.com/klausweinbauer/AAMUtils
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  Project-URL: source, https://github.com/klausweinbauer/AAMUtils
@@ -50,7 +50,9 @@ def load_data():
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  return data
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- def run(n, remove_mode, remove_ratio):
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+ def run(n, remove_mode, remove_ratio, seed=None):
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+ if seed is not None:
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+ random.seed(seed)
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  data = load_data()
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  testcase_cnt = 0
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  success_cnt = 0
@@ -136,6 +138,7 @@ if __name__ == "__main__":
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  default_rm_mode = "rc"
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  default_rm_ratio = 0.5
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  default_n = 1000
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+ default_seed = None
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  parser = argparse.ArgumentParser(
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  prog="benchmarks.py",
@@ -171,6 +174,13 @@ if __name__ == "__main__":
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  + " Default: {}"
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  ).format(default_rm_ratio),
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  )
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+ parser.add_argument(
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+ "--seed",
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+ default=default_seed,
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+ help=(
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+ "The seed used to initialize random number generation. " + "Default: {}"
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+ ).format(default_seed),
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+ )
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  args = parser.parse_args()
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- run(args.n, args.remove_mode, args.remove_ratio)
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+ run(args.n, args.remove_mode, args.remove_ratio, args.seed)
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "aamutils"
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- version = "0.0.2"
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+ version = "0.0.3"
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  authors = [
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  {name="Klaus Weinbauer", email="klaus@bioinf.uni-leipzig.de"}
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  ]
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