XspecT 0.5.2__tar.gz → 0.5.3__tar.gz

{xspect-0.5.2/src/XspecT.egg-info → xspect-0.5.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: XspecT
-Version: 0.5.2
+Version: 0.5.3
 Summary: Tool to monitor and characterize pathogens using Bloom filters.
 License: MIT License
         

{xspect-0.5.2 → xspect-0.5.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "XspecT"
-version = "0.5.2"
+version = "0.5.3"
 description = "Tool to monitor and characterize pathogens using Bloom filters."
 readme = {file = "README.md", content-type = "text/markdown"}
 license = {file = "LICENSE"}

{xspect-0.5.2 → xspect-0.5.3/src/XspecT.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: XspecT
-Version: 0.5.2
+Version: 0.5.3
 Summary: Tool to monitor and characterize pathogens using Bloom filters.
 License: MIT License
         

{xspect-0.5.2 → xspect-0.5.3}/src/xspect/main.py

@@ -49,7 +49,9 @@ def models():
 def download():
     """Download models."""
     click.echo("Downloading models, this may take a while...")
-    download_test_models("http://assets.adrianromberg.com/ake/xspect-models.zip")
+    download_test_models(
+        "https://assets.adrianromberg.com/science/xspect-models-07-08-2025.zip"
+    )
 
 
 @models.command(

{xspect-0.5.2 → xspect-0.5.3}/src/xspect/ncbi.py

@@ -221,6 +221,7 @@ class NCBIHandler:
         """
         endpoint = (
             f"/genome/taxon/{taxon_id}/dataset_report?"
+            f"filters.tax_exact_match=false&"
             f"filters.assembly_source={assembly_source.value}&"
             f"filters.exclude_atypical={exclude_atypical}&"
             f"filters.exclude_paired_reports={exclude_paired_reports}&"
@@ -228,9 +229,9 @@ class NCBIHandler:
             f"page_size={count * 2}&"  # to avoid having less than count if n50 or ANI is not met
         )
         endpoint += (
-            "&filters.reference_only=true"
+            "filters.reference_only=true&"
             if assembly_level == AssemblyLevel.REFERENCE
-            else f"&filters.assembly_level={assembly_level.value}"
+            else f"filters.assembly_level={assembly_level.value}"
         )
 
         response = self._make_request(endpoint)

{xspect-0.5.2 → xspect-0.5.3}/src/xspect/web.py

@@ -31,7 +31,9 @@ def root():
 @router.get("/download-filters")
 def download_filters():
     """Download filters."""
-    download_test_models("http://assets.adrianromberg.com/xspect-models.zip")
+    download_test_models(
+        "https://assets.adrianromberg.com/science/xspect-models-07-08-2025.zip"
+    )
 
 
 @router.get("/classification-result")