XspecT 0.2.4__tar.gz → 0.2.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {xspect-0.2.4/src/XspecT.egg-info → xspect-0.2.5}/PKG-INFO +1 -1
- {xspect-0.2.4 → xspect-0.2.5}/pyproject.toml +1 -1
- {xspect-0.2.4 → xspect-0.2.5/src/XspecT.egg-info}/PKG-INFO +1 -1
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/models/probabilistic_filter_svm_model.py +2 -1
- {xspect-0.2.4 → xspect-0.2.5}/.github/workflows/black.yml +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/.github/workflows/docs.yml +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/.github/workflows/pylint.yml +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/.github/workflows/pypi.yml +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/.github/workflows/test.yml +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/.gitignore +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/LICENSE +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/README.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/About.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/AddFilter.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/AddSpecies1.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/AddSpecies2.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/BF.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/ClAssT_Ergebnis1.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/ClAssT_Ergebnis2.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/ClAssT_Ergebnis3.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/ClAssT_Hauptseite.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/CommandLine_Input.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/CommandLine_results.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/CommandLine_whole.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/How2Use.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/HowtouseAspecT.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Ergebnis1.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Ergebnis2.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Ergebnis3.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Ergebnis4.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Hauptseite.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Runtime.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Runtime_Oxa.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/XspecT_Startseite.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/change_pw.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/modify_vecs.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Instructions/pictures/secretkey.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/Makefile +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/cli.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/conf.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/diagrams/probabilistic_filter_models.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/img/logo.png +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/index.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/input_data.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/installation.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/make.bat +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/quickstart.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/docs/web.md +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/setup.cfg +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/XspecT.egg-info/SOURCES.txt +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/XspecT.egg-info/dependency_links.txt +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/XspecT.egg-info/entry_points.txt +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/XspecT.egg-info/requires.txt +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/XspecT.egg-info/top_level.txt +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/__init__.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/definitions.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/download_filters.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/fastapi.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/file_io.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/main.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/model_management.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/models/__init__.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/models/probabilistic_filter_model.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/models/probabilistic_single_filter_model.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/models/result.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/pipeline.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/run.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/__init__.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/create_svm.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/extract_and_concatenate.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/html_scrap.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/ncbi_api/__init__.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/ncbi_api/download_assemblies.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/ncbi_api/ncbi_children_tree.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/src/xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/__init__.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/conftest.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_cli.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_file_io.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_model_management.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_model_result.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_pipeline.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_probabilistic_filter_model.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_probabilistic_filter_svm_model.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_probabilistic_single_filter_model.py +0 -0
- {xspect-0.2.4 → xspect-0.2.5}/tests/test_train.py +0 -0
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@@ -107,7 +107,7 @@ class ProbabilisticFilterSVMModel(ProbabilisticFilterModel):
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filter_ids: list[str] = None,
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step: int = 1,
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) -> ModelResult:
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"""Predict the labels of the sequences"""
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# get scores and format them for the SVM
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res = super().predict(sequence_input, filter_ids, step=step)
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self.slug(),
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res.hits,
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res.num_kmers,
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sparse_sampling_step=step,
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prediction=str(svm.predict(svm_scores)[0]),
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