VTKio 0.1.0.dev2__tar.gz

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Files changed (43) hide show
  1. vtkio-0.1.0.dev2/.gitignore +315 -0
  2. vtkio-0.1.0.dev2/CITATION.cff +30 -0
  3. vtkio-0.1.0.dev2/LICENSE +28 -0
  4. vtkio-0.1.0.dev2/PKG-INFO +86 -0
  5. vtkio-0.1.0.dev2/README.md +37 -0
  6. vtkio-0.1.0.dev2/examples/ImageData.py +250 -0
  7. vtkio-0.1.0.dev2/examples/PolyData.py +415 -0
  8. vtkio-0.1.0.dev2/examples/RectilinearData.py +267 -0
  9. vtkio-0.1.0.dev2/examples/StructuredGrid.py +442 -0
  10. vtkio-0.1.0.dev2/examples/UnstructuredGrid.py +381 -0
  11. vtkio-0.1.0.dev2/examples/benchmarking.py +74 -0
  12. vtkio-0.1.0.dev2/examples/read_vtk_files.py +83 -0
  13. vtkio-0.1.0.dev2/pyproject.toml +160 -0
  14. vtkio-0.1.0.dev2/src/vtkio/__init__.py +27 -0
  15. vtkio-0.1.0.dev2/src/vtkio/_git.py +45 -0
  16. vtkio-0.1.0.dev2/src/vtkio/helpers.py +110 -0
  17. vtkio-0.1.0.dev2/src/vtkio/reader/__init__.py +15 -0
  18. vtkio-0.1.0.dev2/src/vtkio/reader/hdf5.py +379 -0
  19. vtkio-0.1.0.dev2/src/vtkio/reader/xml.py +712 -0
  20. vtkio-0.1.0.dev2/src/vtkio/simplified.py +621 -0
  21. vtkio-0.1.0.dev2/src/vtkio/utilities.py +222 -0
  22. vtkio-0.1.0.dev2/src/vtkio/version.py +78 -0
  23. vtkio-0.1.0.dev2/src/vtkio/vtk_cell_types.py +98 -0
  24. vtkio-0.1.0.dev2/src/vtkio/vtk_structures.py +306 -0
  25. vtkio-0.1.0.dev2/src/vtkio/writer/__init__.py +16 -0
  26. vtkio-0.1.0.dev2/src/vtkio/writer/pvd_writer.py +132 -0
  27. vtkio-0.1.0.dev2/src/vtkio/writer/vtkhdf.py +1184 -0
  28. vtkio-0.1.0.dev2/src/vtkio/writer/writers.py +393 -0
  29. vtkio-0.1.0.dev2/src/vtkio/writer/xml_writer.py +1597 -0
  30. vtkio-0.1.0.dev2/tests/__init__.py +9 -0
  31. vtkio-0.1.0.dev2/tests/test_read_vtkhdf_vti.py +79 -0
  32. vtkio-0.1.0.dev2/tests/test_read_xml_vti.py +166 -0
  33. vtkio-0.1.0.dev2/tests/test_read_xml_vtp.py +265 -0
  34. vtkio-0.1.0.dev2/tests/test_read_xml_vtr.py +222 -0
  35. vtkio-0.1.0.dev2/tests/test_read_xml_vts.py +240 -0
  36. vtkio-0.1.0.dev2/tests/test_read_xml_vtu.py +274 -0
  37. vtkio-0.1.0.dev2/tests/test_vtkhdf_writer.py +353 -0
  38. vtkio-0.1.0.dev2/tests/test_write_vtkhdf_vts.py +108 -0
  39. vtkio-0.1.0.dev2/tests/test_write_xml_vti.py +517 -0
  40. vtkio-0.1.0.dev2/tests/test_write_xml_vtp.py +700 -0
  41. vtkio-0.1.0.dev2/tests/test_write_xml_vtr.py +654 -0
  42. vtkio-0.1.0.dev2/tests/test_write_xml_vts.py +972 -0
  43. vtkio-0.1.0.dev2/tests/test_write_xml_vtu.py +688 -0
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+ # This CITATION.cff file was generated with cffinit.
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+ # Visit https://bit.ly/cffinit to generate yours today!
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+
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+ cff-version: 1.2.0
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+ title: VTKio
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+ message: >-
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+ If you use this software, please cite it using the
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+ metadata from this file.
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+ type: software
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+ authors:
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+ - given-names: 'John '
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+ family-names: Morrissey
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+ email: morrissey.jp@gmail.com
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+ orcid: 'https://orcid.org/0000-0002-2389-8146'
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+ affiliation: University of Edinburgh
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+ repository-code: 'https://www.github.com/vtkio'
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+ url: 'https://docs'
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+ abstract: >
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+ VTKio is a python library for converting data between VTK
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+ file formats (xml-based and hdf5-based) and numpy arrays.
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+ keywords:
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+ - Python
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+ - NumPy
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+ - VTK
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+ - XML
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+ - HDF5
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+ - VTKHDF
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+ license: BSD-3-Clause
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+ version: 0.1.0
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+ date-released: '2025-06-11'
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+ BSD 3-Clause License
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+
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+ Copyright (c) 2021-2025, John Paul Morrissey. All rights reserved.
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+
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+ Redistribution and use in source and binary forms, with or without
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+ modification, are permitted provided that the following conditions are met:
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+
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+ 1. Redistributions of source code must retain the above copyright notice, this
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+ list of conditions and the following disclaimer.
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+
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+ 2. Redistributions in binary form must reproduce the above copyright notice,
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+ this list of conditions and the following disclaimer in the documentation
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+ and/or other materials provided with the distribution.
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+
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+ 3. Neither the name of the copyright holder nor the names of its
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+ contributors may be used to endorse or promote products derived from
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+ this software without specific prior written permission.
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+
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+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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+ Metadata-Version: 2.4
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+ Name: VTKio
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+ Version: 0.1.0.dev2
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+ Summary: A simple package for converting data between VTK files (XML and HDF5) and NumPy arrays.
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+ Project-URL: Homepage, https://jpmorr.gitlab.io/vtkio
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+ Project-URL: Documentation, https://jpmorr.gitlab.io/vtkio
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+ Project-URL: Issues, https://gitlab.com/jpmorr/vtkio/-/issues
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+ Project-URL: Source, https://gitlab.com/jpmorr/vtkio/-/tree/main
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+ Project-URL: Changelog, https://gitlab.com/jpmorr/vtkio/-/tree/main
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+ Project-URL: donate, https://ko-fi.com/jpmorr
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+ Author-email: JP Morrissey <morrissey.jp@gmail.com>
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+ Maintainer-email: JP Morrissey <morrissey.jp@gmail.com>
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+ License-Expression: BSD-3-Clause
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+ License-File: LICENSE
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+ Keywords: Converter,HDF5,NumPy,VTK,Visualisation,XML
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+ Classifier: Development Status :: 4 - Beta
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+ Classifier: Intended Audience :: Manufacturing
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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+ Classifier: Programming Language :: Python :: Implementation :: CPython
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+ Classifier: Topic :: Scientific/Engineering
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+ Classifier: Topic :: Scientific/Engineering :: Visualization
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+ Requires-Python: >=3.10
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+ Requires-Dist: dotwiz>=0.4.0
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+ Requires-Dist: h5py>=3.11
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+ Requires-Dist: numpy>=2.1
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+ Requires-Dist: pybase64>=1.3
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+ Requires-Dist: xmltodict>=0.13
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+ Provides-Extra: docs
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+ Requires-Dist: markdown-exec[ansi]>=1.10.3; extra == 'docs'
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+ Requires-Dist: mkdocs-autorefs>=1.4.2; extra == 'docs'
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+ Requires-Dist: mkdocs-git-committers-plugin-2>=2.5.0; extra == 'docs'
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+ Requires-Dist: mkdocs-git-revision-date-localized-plugin>=1.4.7; extra == 'docs'
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+ Requires-Dist: mkdocs-material-extensions>=1.3.1; extra == 'docs'
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+ Requires-Dist: mkdocs-material[imaging]>=9.6.14; extra == 'docs'
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+ Requires-Dist: mkdocs>=1.6.1; extra == 'docs'
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+ Requires-Dist: mkdocstrings-python>=0.18; extra == 'docs'
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+ Requires-Dist: mkdocstrings>=0.29.1; extra == 'docs'
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+ Provides-Extra: tests
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+ Requires-Dist: pytest-cov>=6.1.1; extra == 'tests'
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+ Requires-Dist: pytest>=8.3.5; extra == 'tests'
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+ Description-Content-Type: text/markdown
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+
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+ # VTKio
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+ A simple python package for reading and writing Visualization Tool Kit (VTK) files.
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+ ![](https://img.shields.io/badge/Python-3776AB?style=flat&logo=python&logoColor=white)
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+
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+
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+ ## Supported features
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+ Legacy ascii `.vtk` files are not supported and only the newer XML and HDF% based formats are supported.
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+
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+ XML files can be written in `ascii`, `base64` binary and appended `base64` binary formats.
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+ The means all files remain valid `XML` documents.
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+
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+ XML and VTKHDF files can also be read using the associated file readers.
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+
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+ Data is returned in appropriate VTK classes with arrays stored in `numpy` formats.
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+
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+ > [!WARNING]
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+ > VTKHDF files can only be opened in supported software. For example, ParaView has full VTKHDF
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+ > support in 5.13 and above.
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+
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+
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+ ## VTK File Formats
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+ All file formats have been developed based on VTK's [documentation](https://docs.vtk.org/en/latest/index.html) where
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+ the [XML](https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html#xml-file-formats) formats and newer
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+ [VTKHDF](https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html#vtkhdf-file-format) formats are described in detail.
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+ Additional information can be found in [Chapter 5](https://book.vtk.org/en/latest/VTKBook/05Chapter5.html#) of the **VTK Book**.
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+
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+ Further information regarding the VTK data model can be found in the [ParaView documentation](https://docs.paraview.org/en/latest/UsersGuide/understandingData.html#vtk-data-model).
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+
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+ Example datafiles can be found for various filetypes at the [VTK Examples Repository](https://gitlab.kitware.com/vtk/vtk-examples/-/tree/master/src/Testing/Data?ref_type=heads).
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+
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+ For full documentation visit [jpmorr.gitlab.io](https://jpmorr.gitlab.io/vtkio).
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+
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+ ## Related packages
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+
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+ - [PyEVTK](https://github.com/paulo-herrera/PyEVTK)
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+ - [meshio](https://github.com/nschloe/meshio)
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+ - [uvw](https://github.com/prs513rosewood/uvw)
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+ # VTKio
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+ A simple python package for reading and writing Visualization Tool Kit (VTK) files.
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+ ![](https://img.shields.io/badge/Python-3776AB?style=flat&logo=python&logoColor=white)
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+
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+
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+ ## Supported features
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+ Legacy ascii `.vtk` files are not supported and only the newer XML and HDF% based formats are supported.
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+
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+ XML files can be written in `ascii`, `base64` binary and appended `base64` binary formats.
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+ The means all files remain valid `XML` documents.
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+
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+ XML and VTKHDF files can also be read using the associated file readers.
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+
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+ Data is returned in appropriate VTK classes with arrays stored in `numpy` formats.
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+
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+ > [!WARNING]
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+ > VTKHDF files can only be opened in supported software. For example, ParaView has full VTKHDF
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+ > support in 5.13 and above.
19
+
20
+
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+ ## VTK File Formats
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+ All file formats have been developed based on VTK's [documentation](https://docs.vtk.org/en/latest/index.html) where
23
+ the [XML](https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html#xml-file-formats) formats and newer
24
+ [VTKHDF](https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html#vtkhdf-file-format) formats are described in detail.
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+ Additional information can be found in [Chapter 5](https://book.vtk.org/en/latest/VTKBook/05Chapter5.html#) of the **VTK Book**.
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+
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+ Further information regarding the VTK data model can be found in the [ParaView documentation](https://docs.paraview.org/en/latest/UsersGuide/understandingData.html#vtk-data-model).
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+
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+ Example datafiles can be found for various filetypes at the [VTK Examples Repository](https://gitlab.kitware.com/vtk/vtk-examples/-/tree/master/src/Testing/Data?ref_type=heads).
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+
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+ For full documentation visit [jpmorr.gitlab.io](https://jpmorr.gitlab.io/vtkio).
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+
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+ ## Related packages
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+
35
+ - [PyEVTK](https://github.com/paulo-herrera/PyEVTK)
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+ - [meshio](https://github.com/nschloe/meshio)
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+ - [uvw](https://github.com/prs513rosewood/uvw)