UQPyL 2.1.5__tar.gz → 2.1.7__tar.gz

uqpyl-2.1.7/.cache/egg_info/53e97129ac23425689fbc3c2c0adfff1/UQPyL.egg-info/SOURCES.txt

@@ -0,0 +1,372 @@
+LICENSE.md
+MANIFEST.in
+README.md
+pyproject.toml
+setup.py
+UQPyL/__init__.py
+UQPyL/analysis/__init__.py
+UQPyL/analysis/base.py
+UQPyL/analysis/methods/__init__.py
+UQPyL/analysis/methods/_variance.py
+UQPyL/analysis/methods/delta.py
+UQPyL/analysis/methods/fast.py
+UQPyL/analysis/methods/mars.py
+UQPyL/analysis/methods/morris.py
+UQPyL/analysis/methods/rbd_fast.py
+UQPyL/analysis/methods/rsa.py
+UQPyL/analysis/methods/sobol.py
+UQPyL/analysis/runtime/__init__.py
+UQPyL/analysis/runtime/reader.py
+UQPyL/analysis/runtime/result.py
+UQPyL/analysis/runtime/storage.py
+UQPyL/analysis/runtime/verbose.py
+UQPyL/calibration/__init__.py
+UQPyL/calibration/base.py
+UQPyL/calibration/reader.py
+UQPyL/calibration/runtime.py
+UQPyL/calibration/util.py
+UQPyL/calibration/methods/__init__.py
+UQPyL/calibration/methods/_ensemble.py
+UQPyL/calibration/methods/_uncertainty.py
+UQPyL/calibration/methods/es.py
+UQPyL/calibration/methods/glue.py
+UQPyL/calibration/methods/ies.py
+UQPyL/calibration/methods/sufi2.py
+UQPyL/core/__init__.py
+UQPyL/core/config.py
+UQPyL/core/parameter_store.py
+UQPyL/core/params.py
+UQPyL/core/runtime.py
+UQPyL/core/runtime_lifecycle.py
+UQPyL/core/runtime_reader.py
+UQPyL/core/runtime_session.py
+UQPyL/core/runtime_storage.py
+UQPyL/doe/__init__.py
+UQPyL/doe/base.py
+UQPyL/doe/methods/__init__.py
+UQPyL/doe/methods/_sobol.py
+UQPyL/doe/methods/fast.py
+UQPyL/doe/methods/full_fact.py
+UQPyL/doe/methods/lhs.py
+UQPyL/doe/methods/morris.py
+UQPyL/doe/methods/random.py
+UQPyL/doe/methods/saltelli.py
+UQPyL/doe/methods/sobol.py
+UQPyL/inference/__init__.py
+UQPyL/inference/base.py
+UQPyL/inference/chain.py
+UQPyL/inference/diagnostics.py
+UQPyL/inference/methods/__init__.py
+UQPyL/inference/methods/amh.py
+UQPyL/inference/methods/demc.py
+UQPyL/inference/methods/dream_zs.py
+UQPyL/inference/methods/mh.py
+UQPyL/inference/methods/mh_gibbs.py
+UQPyL/inference/runtime/__init__.py
+UQPyL/inference/runtime/reader.py
+UQPyL/inference/runtime/result.py
+UQPyL/inference/runtime/storage.py
+UQPyL/inference/runtime/verbose.py
+UQPyL/optimization/__init__.py
+UQPyL/optimization/base.py
+UQPyL/optimization/population.py
+UQPyL/optimization/core/__init__.py
+UQPyL/optimization/core/constraint.py
+UQPyL/optimization/core/crowding_distance.py
+UQPyL/optimization/core/ga_operator.py
+UQPyL/optimization/core/non_dominated_sort.py
+UQPyL/optimization/core/numerical.py
+UQPyL/optimization/core/tournament.py
+UQPyL/optimization/core/uniform_point.py
+UQPyL/optimization/expensive/__init__.py
+UQPyL/optimization/expensive/_base.py
+UQPyL/optimization/expensive/asmo.py
+UQPyL/optimization/expensive/ego.py
+UQPyL/optimization/expensive/moasmo.py
+UQPyL/optimization/metric/__init__.py
+UQPyL/optimization/metric/_distance.py
+UQPyL/optimization/metric/gd.py
+UQPyL/optimization/metric/hv.py
+UQPyL/optimization/metric/igd.py
+UQPyL/optimization/moea/__init__.py
+UQPyL/optimization/moea/moea_d.py
+UQPyL/optimization/moea/nsga_ii.py
+UQPyL/optimization/moea/nsga_iii.py
+UQPyL/optimization/moea/rvea.py
+UQPyL/optimization/runtime/__init__.py
+UQPyL/optimization/runtime/reader.py
+UQPyL/optimization/runtime/result.py
+UQPyL/optimization/runtime/storage.py
+UQPyL/optimization/runtime/verbose.py
+UQPyL/optimization/soea/__init__.py
+UQPyL/optimization/soea/abc.py
+UQPyL/optimization/soea/csa.py
+UQPyL/optimization/soea/de.py
+UQPyL/optimization/soea/ga.py
+UQPyL/optimization/soea/ml_sce_ua.py
+UQPyL/optimization/soea/pso.py
+UQPyL/optimization/soea/sce_ua.py
+UQPyL/problem/__init__.py
+UQPyL/problem/base.py
+UQPyL/problem/decorators.py
+UQPyL/problem/eval.py
+UQPyL/problem/evaluator.py
+UQPyL/problem/evaluator_base.py
+UQPyL/problem/model_evaluator.py
+UQPyL/problem/model_problem.py
+UQPyL/problem/problem.py
+UQPyL/problem/simulator_base.py
+UQPyL/problem/space.py
+UQPyL/problem/mop/DTLZ.py
+UQPyL/problem/mop/ZDT.py
+UQPyL/problem/mop/__init__.py
+UQPyL/problem/sop/__init__.py
+UQPyL/problem/sop/single_constraint_problem.py
+UQPyL/problem/sop/single_simple_problem.py
+UQPyL/surrogate/__init__.py
+UQPyL/surrogate/_kernel.py
+UQPyL/surrogate/_numeric.py
+UQPyL/surrogate/_restart.py
+UQPyL/surrogate/auto_tuner.py
+UQPyL/surrogate/base.py
+UQPyL/surrogate/metric.py
+UQPyL/surrogate/poly.py
+UQPyL/surrogate/scaler.py
+UQPyL/surrogate/setting.py
+UQPyL/surrogate/split.py
+UQPyL/surrogate/gp/__init__.py
+UQPyL/surrogate/gp/gaussian_process.py
+UQPyL/surrogate/gp/kernel/__init__.py
+UQPyL/surrogate/gp/kernel/base_kernel.py
+UQPyL/surrogate/gp/kernel/c_kernel_.py
+UQPyL/surrogate/gp/kernel/dot_kernel_.py
+UQPyL/surrogate/gp/kernel/matern_kernel.py
+UQPyL/surrogate/gp/kernel/rbf_kernel.py
+UQPyL/surrogate/gp/kernel/rq_kernel.py
+UQPyL/surrogate/kriging/__init__.py
+UQPyL/surrogate/kriging/kriging.py
+UQPyL/surrogate/kriging/kernel/__init__.py
+UQPyL/surrogate/kriging/kernel/base_kernel.py
+UQPyL/surrogate/kriging/kernel/cubic_kernel.py
+UQPyL/surrogate/kriging/kernel/exp_kernel.py
+UQPyL/surrogate/kriging/kernel/guass_kernel.py
+UQPyL/surrogate/mars/__init__.py
+UQPyL/surrogate/mars/mars.py
+UQPyL/surrogate/mars/core/__init__.py
+UQPyL/surrogate/mars/core/_basis.pxd
+UQPyL/surrogate/mars/core/_basis.pyx
+UQPyL/surrogate/mars/core/_forward.pxd
+UQPyL/surrogate/mars/core/_forward.pyx
+UQPyL/surrogate/mars/core/_knot_search.pxd
+UQPyL/surrogate/mars/core/_knot_search.pyx
+UQPyL/surrogate/mars/core/_pruning.pxd
+UQPyL/surrogate/mars/core/_pruning.pyx
+UQPyL/surrogate/mars/core/_qr.pxd
+UQPyL/surrogate/mars/core/_qr.pyx
+UQPyL/surrogate/mars/core/_record.pxd
+UQPyL/surrogate/mars/core/_record.pyx
+UQPyL/surrogate/mars/core/_types.pxd
+UQPyL/surrogate/mars/core/_types.pyx
+UQPyL/surrogate/mars/core/_util.pxd
+UQPyL/surrogate/mars/core/_util.pyx
+UQPyL/surrogate/rbf/__init__.py
+UQPyL/surrogate/rbf/radial_basis_function.py
+UQPyL/surrogate/rbf/kernel/__init__.py
+UQPyL/surrogate/rbf/kernel/base_kernel.py
+UQPyL/surrogate/rbf/kernel/cubic_kernel.py
+UQPyL/surrogate/rbf/kernel/gaussian_kernel.py
+UQPyL/surrogate/rbf/kernel/linear_kernel.py
+UQPyL/surrogate/rbf/kernel/multiquadric_kernel.py
+UQPyL/surrogate/rbf/kernel/thin_plate_spline_kernel.py
+UQPyL/surrogate/regression/__init__.py
+UQPyL/surrogate/regression/linear_regression.py
+UQPyL/surrogate/regression/polynomial_regression.py
+UQPyL/surrogate/regression/lasso/__init__.py
+UQPyL/surrogate/regression/lasso/cython_utils.pxd
+UQPyL/surrogate/regression/lasso/cython_utils.pyx
+UQPyL/surrogate/regression/lasso/lasso_fast.pyx
+UQPyL/surrogate/svr/__init__.py
+UQPyL/surrogate/svr/support_vector_machine.py
+UQPyL/surrogate/svr/core/__init__.py
+UQPyL/surrogate/svr/core/libsvm_interface.cpp
+UQPyL/surrogate/svr/core/svm.cpp
+UQPyL/surrogate/svr/core/svm.h
+UQPyL/surrogate/util/__init__.py
+UQPyL/surrogate/util/boxmin.py
+UQPyL/surrogate/util/lbfgsb.py
+UQPyL/viz/__init__.py
+UQPyL/viz/analysis.py
+UQPyL/viz/common.py
+UQPyL/viz/inference.py
+UQPyL/viz/optimization.py
+UQPyL/viz/surrogate.py
+tests/test_abc_abandonment.py
+tests/test_analysis_base_branches.py
+tests/test_analysis_benchmarks.py
+tests/test_analysis_coordinates_and_effects.py
+tests/test_analysis_delta.py
+tests/test_analysis_delta_more.py
+tests/test_analysis_delta_scaling.py
+tests/test_analysis_delta_subset_range.py
+tests/test_analysis_delta_ties.py
+tests/test_analysis_delta_validation.py
+tests/test_analysis_design_validation.py
+tests/test_analysis_extreme_input_and_statistics.py
+tests/test_analysis_mars_reliability.py
+tests/test_analysis_mars_stability.py
+tests/test_analysis_more_methods.py
+tests/test_analysis_morris.py
+tests/test_analysis_morris_unit_effects.py
+tests/test_analysis_output_range.py
+tests/test_analysis_output_scale.py
+tests/test_analysis_rbd_fast_validation.py
+tests/test_analysis_rsa_statistics.py
+tests/test_analysis_scientific_references.py
+tests/test_analysis_shape_contracts.py
+tests/test_analysis_sobol_more.py
+tests/test_autotuner_preprocessing.py
+tests/test_autotuner_split_and_report_contracts.py
+tests/test_autotuner_vector_parameters.py
+tests/test_calibration_accuracy_repairs.py
+tests/test_calibration_base.py
+tests/test_calibration_covariance.py
+tests/test_calibration_ensemble_preflight.py
+tests/test_calibration_es.py
+tests/test_calibration_evaluation_and_storage.py
+tests/test_calibration_followup_controls.py
+tests/test_calibration_gain_work.py
+tests/test_calibration_glue.py
+tests/test_calibration_ies.py
+tests/test_calibration_metric_boundaries.py
+tests/test_calibration_metric_direction.py
+tests/test_calibration_metric_scaling.py
+tests/test_calibration_pbias.py
+tests/test_calibration_posterior_moments.py
+tests/test_calibration_projection_contracts.py
+tests/test_calibration_range_and_ess.py
+tests/test_calibration_result_isolation.py
+tests/test_calibration_rmse_range.py
+tests/test_calibration_sufi2.py
+tests/test_calibration_unified_output.py
+tests/test_calibration_util.py
+tests/test_calibration_zero_noise.py
+tests/test_closeout_runtime_and_plot_data.py
+tests/test_documented_workflows.py
+tests/test_doe_base.py
+tests/test_doe_design_structure.py
+tests/test_doe_documentation_examples.py
+tests/test_doe_edge_regressions.py
+tests/test_doe_sampling.py
+tests/test_dream_archive_isolation.py
+tests/test_gpr_likelihood_crosschecks.py
+tests/test_gpr_likelihood_direction.py
+tests/test_gpr_noise_accuracy.py
+tests/test_hv_batching.py
+tests/test_inference_algorithms_more.py
+tests/test_inference_base_and_chain.py
+tests/test_inference_benchmarks.py
+tests/test_inference_common_structure.py
+tests/test_inference_demc_configuration.py
+tests/test_inference_diagnostics.py
+tests/test_inference_diagnostics_and_partial_results.py
+tests/test_inference_incremental_history.py
+tests/test_inference_mh.py
+tests/test_inference_mixed_coordinates.py
+tests/test_inference_more_branches.py
+tests/test_inference_probability_and_covariance.py
+tests/test_inference_proposal_scales.py
+tests/test_inference_result_isolation_and_directions.py
+tests/test_inference_stop_reason_persistence.py
+tests/test_inference_transition_correctness.py
+tests/test_kriging_quadratic_trend.py
+tests/test_lasso_input_isolation.py
+tests/test_lbfgsb_returns.py
+tests/test_lhs_correlation.py
+tests/test_mars_missingness_basis.py
+tests/test_moasmo_advanced_infilling.py
+tests/test_model_mask_layouts.py
+tests/test_model_problem.py
+tests/test_observation_vector_contract.py
+tests/test_optimization_algorithms_smoke.py
+tests/test_optimization_asmo_reproducibility.py
+tests/test_optimization_base_termination_branches.py
+tests/test_optimization_capabilities_and_stop_reasons.py
+tests/test_optimization_configuration_lifecycle.py
+tests/test_optimization_constraint_weights.py
+tests/test_optimization_ego_component_contracts.py
+tests/test_optimization_evaluation_and_persistence.py
+tests/test_optimization_history_policy.py
+tests/test_optimization_hv_scheduling.py
+tests/test_optimization_iteration_budget.py
+tests/test_optimization_logic_and_range.py
+tests/test_optimization_module_layout.py
+tests/test_optimization_more_algorithms_smoke.py
+tests/test_optimization_more_coverage.py
+tests/test_optimization_multiobjective_regressions.py
+tests/test_optimization_population.py
+tests/test_optimization_population_branches.py
+tests/test_optimization_population_more.py
+tests/test_optimization_reference_point_validation.py
+tests/test_optimization_result.py
+tests/test_optimization_sce_pso_smoke.py
+tests/test_optimization_sqlite_reader.py
+tests/test_optimization_stopping_semantics.py
+tests/test_optimization_unit_space.py
+tests/test_optimization_utils_and_metrics.py
+tests/test_package_entry.py
+tests/test_problem.py
+tests/test_problem_base.py
+tests/test_problem_conversion_regressions.py
+tests/test_problem_discrete_mapping.py
+tests/test_problem_docstrings.py
+tests/test_problem_eval_contract.py
+tests/test_problem_mop_pf.py
+tests/test_problem_public_contracts.py
+tests/test_problem_sop_mop_smoke.py
+tests/test_problem_utils.py
+tests/test_rbf_singular_warning.py
+tests/test_rbf_smoothing.py
+tests/test_rng_no_global_numpy_random_usage.py
+tests/test_runtime_common.py
+tests/test_runtime_domain_and_identity.py
+tests/test_runtime_failures.py
+tests/test_runtime_reader_field_names.py
+tests/test_sufi2_mixed_domains.py
+tests/test_surrogate_autotuner.py
+tests/test_surrogate_base_rbf_krg_gpr.py
+tests/test_surrogate_boxmin_via_gp.py
+tests/test_surrogate_fit_and_validation.py
+tests/test_surrogate_gp_kriging.py
+tests/test_surrogate_kernel_regressions.py
+tests/test_surrogate_kernel_templates.py
+tests/test_surrogate_kernel_validation.py
+tests/test_surrogate_kernels.py
+tests/test_surrogate_linear_regression_more.py
+tests/test_surrogate_mars_derivative_contracts.py
+tests/test_surrogate_mars_initialization.py
+tests/test_surrogate_mars_refit_lifecycle.py
+tests/test_surrogate_mars_smoke.py
+tests/test_surrogate_mp_bounds_rng.py
+tests/test_surrogate_numeric_ranges.py
+tests/test_surrogate_polynomial_regression.py
+tests/test_surrogate_prediction_accuracy.py
+tests/test_surrogate_prediction_work.py
+tests/test_surrogate_public_fit_contracts.py
+tests/test_surrogate_randomness_and_failures.py
+tests/test_surrogate_rbf_smoke.py
+tests/test_surrogate_regression.py
+tests/test_surrogate_regression_multioutput.py
+tests/test_surrogate_restarts.py
+tests/test_surrogate_scaler_regressions.py
+tests/test_surrogate_single_output_contract.py
+tests/test_surrogate_solver_boundaries.py
+tests/test_surrogate_split_randomness.py
+tests/test_surrogate_svr_smoke.py
+tests/test_surrogate_tuning_lifecycle.py
+tests/test_svr_convergence_status.py
+tests/test_user_workflows.py
+tests/test_util_metric.py
+tests/test_util_split.py
+tests/test_viz_smoothing_contracts.py
+tests/test_viz_sqlite_plots.py
+tests/test_viz_surrogate_limits.py

uqpyl-2.1.7/LICENSE.md

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) [2025] [wmtSky]
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

uqpyl-2.1.7/MANIFEST.in

@@ -0,0 +1,18 @@
+include README.md
+include LICENSE.md
+
+recursive-include UQPyL *.pyx
+recursive-include UQPyL *.pxd
+recursive-include UQPyL *.h
+recursive-include UQPyL *.cpp
+
+global-exclude *.pyd
+global-exclude *.so
+global-exclude *.dll
+global-exclude __pycache__
+global-exclude *.py[cod]
+
+prune build
+prune dist
+prune .cache
+prune .codex/pytest_cache