UQPyL 2.0.2__tar.gz → 2.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (108) hide show
  1. {UQPyL-2.0.2 → UQPyL-2.0.4}/PKG-INFO +1 -1
  2. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/__init__.py +1 -1
  3. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/asmo.py +17 -10
  4. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/mo_asmo.py +2 -2
  5. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/problem_ABC.py +2 -1
  6. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/base_kernel.py +3 -3
  7. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL.egg-info/PKG-INFO +1 -1
  8. {UQPyL-2.0.2 → UQPyL-2.0.4}/pyproject.toml +1 -1
  9. {UQPyL-2.0.2 → UQPyL-2.0.4}/setup.py +1 -1
  10. {UQPyL-2.0.2 → UQPyL-2.0.4}/LICENSE.md +0 -0
  11. {UQPyL-2.0.2 → UQPyL-2.0.4}/README.md +0 -0
  12. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/__init__.py +0 -0
  13. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/_lhs.py +0 -0
  14. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/fast_sequence.py +0 -0
  15. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/full_fact.py +0 -0
  16. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/lhs.py +0 -0
  17. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/morris_sequence.py +0 -0
  18. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/random.py +0 -0
  19. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/sampler_ABC.py +0 -0
  20. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/DoE/sobol_sequence.py +0 -0
  21. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/__init__.py +0 -0
  22. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/_binary_ga.py +0 -0
  23. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/adam.py +0 -0
  24. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/boxmin.py +0 -0
  25. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/ga.py +0 -0
  26. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/moea_d.py +0 -0
  27. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/nsga_ii.py +0 -0
  28. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/pso.py +0 -0
  29. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/sce_ua.py +0 -0
  30. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/utility_functions/_NDsort.py +0 -0
  31. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/utility_functions/__init__.py +0 -0
  32. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/optimization/utility_functions/_uniformPoint.py +0 -0
  33. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/__init__.py +0 -0
  34. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/multi_DTLZ.py +0 -0
  35. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/multi_ZDT.py +0 -0
  36. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/pratical_problem.py +0 -0
  37. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/single_Benchmarks.py +0 -0
  38. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/utility_functions/_NDsort.py +0 -0
  39. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/utility_functions/__init__.py +0 -0
  40. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/problems/utility_functions/_uniformPoint.py +0 -0
  41. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/__init__.py +0 -0
  42. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/delta_test.py +0 -0
  43. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/fast.py +0 -0
  44. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/mars_sa.py +0 -0
  45. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/morris.py +0 -0
  46. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/rbd_fast.py +0 -0
  47. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/rsa.py +0 -0
  48. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/sa_ABC.py +0 -0
  49. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/sensibility/sobol.py +0 -0
  50. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/BaggingEnsemble.py +0 -0
  51. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/BootstrapEnsemble.py +0 -0
  52. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/__init__.py +0 -0
  53. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/fully_connect_neural_network.py +0 -0
  54. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gaussian_process.py +0 -0
  55. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/__init__.py +0 -0
  56. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/c_kernel.py +0 -0
  57. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/dot_kernel.py +0 -0
  58. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/matern_kernel.py +0 -0
  59. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/rbf_kernel.py +0 -0
  60. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/gp_kernels/rq_kernel.py +0 -0
  61. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/krg_kernels/__init__.py +0 -0
  62. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/krg_kernels/base_kernel.py +0 -0
  63. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/krg_kernels/cubic_kernel.py +0 -0
  64. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/krg_kernels/exp_kernel.py +0 -0
  65. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/krg_kernels/guass_kernel.py +0 -0
  66. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/kriging.py +0 -0
  67. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/lasso_/__init__.py +0 -0
  68. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/lasso_/lasso_fast.c +0 -0
  69. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/linear_regression.py +0 -0
  70. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars.py +0 -0
  71. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/__init__.py +0 -0
  72. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_basis.c +0 -0
  73. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_forward.c +0 -0
  74. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_knot_search.c +0 -0
  75. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_pruning.c +0 -0
  76. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_qr.c +0 -0
  77. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_record.c +0 -0
  78. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_types.c +0 -0
  79. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/_util.c +0 -0
  80. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mars_/pyearth/__init__.py +0 -0
  81. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mlp_utility/__init__.py +0 -0
  82. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mlp_utility/_activation_funcs.py +0 -0
  83. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/mlp_utility/base.py +0 -0
  84. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/polynomial_regression.py +0 -0
  85. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/radial_basis_function.py +0 -0
  86. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/__init__.py +0 -0
  87. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/base_kernel.py +0 -0
  88. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/cubic_kernel.py +0 -0
  89. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/gaussian_kernel.py +0 -0
  90. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/linear_kernel.py +0 -0
  91. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/multiquadric_kernel.py +0 -0
  92. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/rbf_kernels/thin_plate_spline_kernel.py +0 -0
  93. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/support_vector_machine.py +0 -0
  94. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/surrogate_ABC.py +0 -0
  95. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/svr_/__init__.py +0 -0
  96. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/svr_/libsvm_interface.cpp +0 -0
  97. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/surrogates/svr_/svm.cpp +0 -0
  98. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/__init__.py +0 -0
  99. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/grid_search.py +0 -0
  100. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/metrics.py +0 -0
  101. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/model_selections.py +0 -0
  102. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/polynomial_features.py +0 -0
  103. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL/utility/scalers.py +0 -0
  104. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL.egg-info/SOURCES.txt +0 -0
  105. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL.egg-info/dependency_links.txt +0 -0
  106. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL.egg-info/requires.txt +0 -0
  107. {UQPyL-2.0.2 → UQPyL-2.0.4}/UQPyL.egg-info/top_level.txt +0 -0
  108. {UQPyL-2.0.2 → UQPyL-2.0.4}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: UQPyL
3
- Version: 2.0.2
3
+ Version: 2.0.4
4
4
  Summary: A python package for parameter uncertainty quantification and optimization
5
5
  Author: wmtSky
6
6
  Author-email: wmtSky <wmtsky@hhu.edu.cn>
@@ -1,6 +1,6 @@
1
1
  from . import problems, surrogates, optimization, sensibility, DoE, utility
2
2
 
3
- __version__ = "2.0.1"
3
+ __version__ = "2.0.4"
4
4
  __author__ = "wmtSky"
5
5
 
6
6
  __all__=[
@@ -3,6 +3,7 @@ from tqdm import tqdm
3
3
  from typing import Optional
4
4
 
5
5
  from .sce_ua import SCE_UA
6
+ from .pso import PSO
6
7
  from ..DoE import LHS
7
8
  from ..problems import Problem
8
9
  from ..surrogates import Surrogate
@@ -46,11 +47,11 @@ class ASMO():
46
47
  #construct optimization problem to combine surrogate and algorithm
47
48
  self.subProblem=Problem(self.surrogate.predict, self.n_input, 1, self.ub, self.lb)
48
49
 
49
- def run(self,maxFE=1000, Tolerate=0.001, maxTolerateTime=50, oneStep=False):
50
+ def run(self, oneStep=False):
50
51
  '''
51
52
  main procedure
52
53
  '''
53
- show_process=tqdm(total=maxFE)
54
+ show_process=tqdm(total=self.maxFE)
54
55
  FE=0
55
56
  TT=0
56
57
  n_input=self.n_input
@@ -65,22 +66,24 @@ class ASMO():
65
66
  XPop=self.x_init
66
67
  YPop=self.y_init
67
68
 
68
- fe=YPop.shape[0]
69
- show_process.update(fe)
69
+ FE=YPop.shape[0]
70
+ show_process.update(FE)
70
71
  ###
71
72
  idx=np.argsort(YPop, axis=0)
72
73
  BestY=YPop[idx[0,0],0]
73
74
  BestX=XPop[idx[0,0],:]
75
+ history_best_decs={}
76
+ history_best_objs={}
74
77
  # history_BestY=[]; history_BestX=[]
75
78
  # history_BestX.append(BestX)
76
79
  # history_BestY.append(BestY)
77
80
 
78
81
  if (oneStep==False):
79
- while fe<self.maxFE and TT<self.maxTolerateTime:
82
+ while FE<self.maxFE and TT<self.maxTolerateTime:
80
83
  show_process.update(1)
81
84
  # Build surrogate model
82
85
  self.surrogate.fit(XPop, YPop)
83
- res=SCE_UA(self.subProblem).run()
86
+ res=PSO(self.subProblem).run()
84
87
  BestX_SM=res['best_dec']
85
88
 
86
89
  TempY=self.evaluate(BestX_SM)
@@ -89,24 +92,28 @@ class ASMO():
89
92
  YPop=np.vstack((YPop,TempY))
90
93
 
91
94
  if TempY[0,0]<BestY:
92
- BestY=np.copy(TempY)
95
+ BestY=np.copy(TempY[0,0])
93
96
  BestX=np.copy(BestX_SM)
97
+ history_best_decs[FE]=BestX
98
+ history_best_objs[FE]=BestY
94
99
  else:
95
100
  self.surrogate.fit(XPop, YPop)
96
101
  res=SCE_UA(self.subProblem).run()
97
- BestX_SM=res['best_decs']
102
+ BestX_SM=res['best_dec']
98
103
 
99
104
  TempY=self.evaluate(BestX_SM)
100
105
 
101
- fe+=1
106
+ FE+=1
102
107
  XPop=np.vstack((XPop,BestX_SM))
103
108
  YPop=np.vstack((YPop,TempY))
104
109
 
105
110
  if TempY[0,0]<BestY:
106
111
  BestY=np.copy(TempY)
107
112
  BestX=np.copy(BestX_SM)
113
+ history_best_decs[FE]=BestX
114
+ history_best_objs[FE]=BestY
108
115
 
109
- Result={'best_dec':BestX, 'best_obj':BestY, 'FE':fe}
116
+ Result={'best_dec':BestX, 'best_obj':BestY, 'history_best_decs': history_best_decs, 'history_best_objs':history_best_objs ,'FE':FE}
110
117
 
111
118
  return Result
112
119
 
@@ -101,8 +101,8 @@ class MOASMO():
101
101
  nsga_ii=NSGAII(self.subProblem, self.n_pop)
102
102
  #main optimization
103
103
  Result=nsga_ii.run()
104
- BestX=Result['pareto_X']
105
- BestY=Result['pareto_Y']
104
+ BestX=Result['pareto_x']
105
+ BestY=Result['pareto_y']
106
106
  CrowdDis=Result['crowdDis']
107
107
 
108
108
  if self.advance_infilling==False:
@@ -48,6 +48,7 @@ class ProblemABC(metaclass=abc.ABCMeta):
48
48
 
49
49
  def _check_bound(self,bound: np.ndarray):
50
50
 
51
- if(not bound.shape[1]==self.n_input):
51
+ bound=bound.ravel()
52
+ if(not bound.shape[0]==self.n_input):
52
53
  raise ValueError('the input bound is inconsistent with the input n_inputensions')
53
54
 
@@ -3,9 +3,9 @@ from typing import Union
3
3
 
4
4
  class Gp_Kernel():
5
5
  def __init__(self):
6
- self._theta=None
7
- self._theta_ub=None
8
- self._theta_lb=None
6
+ self._theta={}
7
+ self._theta_ub={}
8
+ self._theta_lb={}
9
9
 
10
10
  def __check_array__(self, value: Union[float,np.ndarray]):
11
11
 
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: UQPyL
3
- Version: 2.0.2
3
+ Version: 2.0.4
4
4
  Summary: A python package for parameter uncertainty quantification and optimization
5
5
  Author: wmtSky
6
6
  Author-email: wmtSky <wmtsky@hhu.edu.cn>
@@ -12,7 +12,7 @@ build-backend = "setuptools.build_meta"
12
12
 
13
13
  [project]
14
14
  name = "UQPyL"
15
- version = "2.0.2"
15
+ version = "2.0.4"
16
16
  authors = [
17
17
  {name = "wmtSky", email = "wmtsky@hhu.edu.cn"}
18
18
  ]
@@ -41,7 +41,7 @@ extensions=cythonize(cython_extensions, compiler_directives={'cdivision': True,
41
41
  setup(
42
42
  name="UQPyL",
43
43
  author="wmtSky",
44
- version="2.0.2",
44
+ version="2.0.4",
45
45
  author_email="wmtsky@hhu.edu.cn",
46
46
  # ... 其他常规setup参数 ...
47
47
  ext_modules=extensions, # 如果有自定义的编译行为
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