TwoPy 0.3.4__tar.gz → 0.3.6__tar.gz

{twopy-0.3.4 → twopy-0.3.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: twopy
-Version: 0.3.4
+Version: 0.3.6
 Summary: Two-photon imaging analysis tool with a napari interface.
 Author-email: Gustavo Madeira Santana <fromweb1@gumadeiras.com>
 License-Expression: MIT

{twopy-0.3.4 → twopy-0.3.6}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "twopy"
-version = "0.3.4"
+version = "0.3.6"
 description = "Two-photon imaging analysis tool with a napari interface."
 readme = "README.md"
 requires-python = ">=3.13,<3.14"

{twopy-0.3.4 → twopy-0.3.6}/src/twopy/converted.py

@@ -234,7 +234,7 @@ def load_converted_recording(
         if len(movie_shape) != 3:
             msg = f"aligned movie shape must have 3 dimensions: {movie_shape}"
             raise ValueError(msg)
-        movie_shape_3d = cast(tuple[int, int, int], movie_shape)
+        movie_shape_3d = movie_shape
 
         recording = RecordingData(
             path=data_path,

{twopy-0.3.4 → twopy-0.3.6}/src/twopy/napari/empty_state.py

@@ -85,10 +85,10 @@ def show_empty_viewer_message(
     overlay.text = empty_viewer_message(update_command=update_command)
     overlay.visible = True
     overlay.position = "top_center"
-    overlay.font_size = 13
-    overlay.color = "white"
-    overlay.box = True
-    overlay.box_color = (0.0, 0.0, 0.0, 0.65)
+    overlay.font_size = 18
+    overlay.color = "#c8cdd3"
+    overlay.box = False
+    overlay.box_color = (0.0, 0.0, 0.0, 0.0)
 
 
 def hide_empty_viewer_message(viewer: object) -> None:

{twopy-0.3.4 → twopy-0.3.6}/src/twopy/napari/protocols.py

@@ -80,6 +80,24 @@ class NapariViewer(Protocol):
         """
         ...
 
+    def reset_view(
+        self,
+        *,
+        margin: float = 0.05,
+        reset_camera_angle: bool = True,
+    ) -> None:
+        """Fit visible layers into the current viewer canvas.
+
+        Args:
+            margin: Fractional padding around visible layer extents.
+            reset_camera_angle: Whether to reset camera orientation as well as
+                zoom and pan.
+
+        Returns:
+            None.
+        """
+        ...
+
 
 class NapariLayerWithData(Protocol):
     """Small protocol for napari layers that expose array-like data.

{twopy-0.3.4 → twopy-0.3.6}/src/twopy/napari/version_check.py

@@ -137,7 +137,12 @@ def check_for_update(
     """
     checked_now = _utc(now)
     cache = read_version_check_cache(state_file=state_file)
-    if _cache_is_fresh(cache, now=checked_now, max_age=max_age):
+    if _cache_is_fresh(
+        cache,
+        now=checked_now,
+        max_age=max_age,
+        current_version=current_version,
+    ):
         return _notice_from_cache(current_version, cache)
 
     try:
@@ -243,6 +248,7 @@ def _cache_is_fresh(
     *,
     now: datetime,
     max_age: timedelta,
+    current_version: str,
 ) -> bool:
     """Return whether the cache is young enough to skip a network check."""
     if cache is None:
@@ -250,6 +256,13 @@ def _cache_is_fresh(
     checked_at = _parse_cached_datetime(cache.checked_at)
     if checked_at is None:
         return False
+    try:
+        current = Version(current_version)
+        latest = Version(cache.latest_version)
+    except InvalidVersion:
+        return False
+    if latest < current:
+        return False
     return now - checked_at <= max_age
 
 

{twopy-0.3.4 → twopy-0.3.6}/src/twopy/napari/viewer.py

@@ -17,6 +17,7 @@ from typing import TYPE_CHECKING, Protocol, cast
 
 import numpy as np
 import numpy.typing as npt
+from qtpy.QtCore import QTimer
 
 from twopy._version import __version__
 from twopy.napari.empty_state import (
@@ -368,6 +369,11 @@ def add_prepared_recording_to_viewer(
         )
         set_labels_brush_size(roi_layer, brush_size=6)
 
+    QTimer.singleShot(
+        0,
+        lambda: viewer.reset_view(margin=0.05, reset_camera_angle=False),
+    )
+
     from twopy.napari.types import NapariRecordingView
 
     return NapariRecordingView(
@@ -398,7 +404,10 @@ def create_viewer() -> NapariViewer:
     """
     import napari
 
-    viewer = cast(NapariViewer, napari.Viewer(title=APPLICATION_TITLE))
+    viewer = cast(
+        NapariViewer,
+        napari.Viewer(title=APPLICATION_TITLE, show_welcome_screen=False),
+    )
     _set_application_icon(viewer)
     show_empty_viewer_message(viewer)
     return viewer

{twopy-0.3.4 → twopy-0.3.6}/src/twopy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: twopy
-Version: 0.3.4
+Version: 0.3.6
 Summary: Two-photon imaging analysis tool with a napari interface.
 Author-email: Gustavo Madeira Santana <fromweb1@gumadeiras.com>
 License-Expression: MIT

{twopy-0.3.4 → twopy-0.3.6}/tests/test_api.py

@@ -9,7 +9,6 @@ import unittest
 from pathlib import Path
 
 from tests.tempdir import temporary_directory
-
 from twopy import find_recordings, finite_mean_and_sem
 from twopy.api import finite_mean_and_sem as api_finite_mean_and_sem
 

{twopy-0.3.4 → twopy-0.3.6}/tests/test_database.py

@@ -9,7 +9,6 @@ import unittest
 from pathlib import Path
 
 from tests.tempdir import temporary_directory
-
 from twopy.config import TwopyConfig
 from twopy.database import (
     ExperimentSearchFilters,

{twopy-0.3.4 → twopy-0.3.6}/tests/test_load_workflow.py

@@ -115,6 +115,15 @@ class _Viewer:
         self.labels.append(layer)
         return layer
 
+    def reset_view(
+        self,
+        *,
+        margin: float = 0.05,
+        reset_camera_angle: bool = True,
+    ) -> None:
+        """Accept the recording-view camera fit request."""
+        del margin, reset_camera_angle
+
 
 @dataclass
 class _State:

{twopy-0.3.4 → twopy-0.3.6}/tests/test_napari.py

@@ -31,6 +31,7 @@ from tests.napari_support import (
     np,
     open_recording_in_napari,
     patch,
+    process_qt_events_until,
     roi_label_image_from_layer,
     save_napari_label_rois,
     save_roi_set,
@@ -433,12 +434,18 @@ class CoreNapariAdapterTest(NapariAdapterTestCase):
 
         self.assertIs(created, viewer)
         self.assertEqual(APPLICATION_TITLE, f"twopy {__version__}")
-        viewer_constructor.assert_called_once_with(title=APPLICATION_TITLE)
+        viewer_constructor.assert_called_once_with(
+            title=APPLICATION_TITLE,
+            show_welcome_screen=False,
+        )
         self.assertFalse(viewer.welcome_screen.visible)
         self.assertEqual(viewer.text_overlay.text, EMPTY_VIEWER_MESSAGE)
         self.assertTrue(viewer.text_overlay.text.startswith(f"{APPLICATION_TITLE}\n"))
         self.assertTrue(viewer.text_overlay.visible)
         self.assertEqual(viewer.text_overlay.position, "top_center")
+        self.assertEqual(viewer.text_overlay.font_size, 18)
+        self.assertEqual(viewer.text_overlay.color, "#c8cdd3")
+        self.assertFalse(viewer.text_overlay.box)
         icon = viewer.window._qt_window.window_icon
         self.assertIsNotNone(icon)
         assert icon is not None
@@ -727,6 +734,7 @@ class CoreNapariAdapterTest(NapariAdapterTestCase):
                 viewer=viewer,
                 movie_frame_range=(0, 1),
             )
+            process_qt_events_until(lambda: len(viewer.reset_view_calls) == 1)
 
             self.assertIs(opened.viewer, viewer)
             self.assertEqual(opened.recording.movie.shape, (3, 2, 2))
@@ -744,6 +752,10 @@ class CoreNapariAdapterTest(NapariAdapterTestCase):
             self.assertEqual(viewer.images[1].contrast_limits_range, (0.0, 7.0))
             self.assertEqual(np.asarray(viewer.images[1].data).shape, (2, 2, 2))
             self.assertEqual(len(viewer.labels), 1)
+            self.assertEqual(
+                viewer.reset_view_calls,
+                [{"margin": 0.05, "reset_camera_angle": False}],
+            )
             np.testing.assert_array_equal(
                 np.unique(np.asarray(viewer.labels[0].data)),
                 np.array([0, 3, 4]),

{twopy-0.3.4 → twopy-0.3.6}/tests/test_napari_group_matching_responses.py

@@ -20,7 +20,6 @@ from tests.napari_support import (
     temporary_directory,
     unittest,
 )
-
 from twopy.napari.group_matching.responses import SelectedRoiResponseCache
 
 

{twopy-0.3.4 → twopy-0.3.6}/tests/test_pixel_calibration.py

@@ -9,7 +9,6 @@ from datetime import date
 from pathlib import Path
 
 from tests.tempdir import temporary_directory
-
 from twopy import (
     DEFAULT_PIXEL_CALIBRATION_PATH,
     PixelCalibrationRow,

{twopy-0.3.4 → twopy-0.3.6}/tests/test_session.py

@@ -8,7 +8,6 @@ import unittest
 from pathlib import Path
 
 from tests.tempdir import temporary_directory
-
 from twopy.session import discover_session_files
 
 

{twopy-0.3.4 → twopy-0.3.6}/tests/test_version_check.py

@@ -122,6 +122,24 @@ class VersionCheckTest(unittest.TestCase):
 
             self.assertIsNone(notice)
 
+    def test_fresh_cache_older_than_install_checks_network(self) -> None:
+        """Confirm downgraded installs do not trust an older fresh cache."""
+        with temporary_directory() as temp_dir:
+            state_file = Path(temp_dir) / "state.json"
+            now = datetime(2026, 6, 18, 12, tzinfo=UTC)
+            _write_cache(state_file, checked_at=now, latest_version="0.3.2")
+
+            notice = check_for_update(
+                current_version="0.3.3",
+                now=now + timedelta(hours=1),
+                state_file=state_file,
+                fetch_latest=lambda: PublishedVersion(version="0.3.4"),
+            )
+
+            self.assertIsNotNone(notice)
+            assert notice is not None
+            self.assertEqual(notice.latest_version, "0.3.4")
+
     def test_fetch_pypi_published_version_validates_response_shape(self) -> None:
         """Confirm PyPI JSON parsing accepts only expected string fields."""
         response = _FakeResponse(