TabNado 0.1.0__tar.gz

tabnado-0.1.0/.dockerignore

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+.git
+.github
+.vscode
+.pytest_cache
+__pycache__
+*.pyc
+*.pyo
+*.pyd
+*.log
+
+# Local and generated artifacts
+test_output
+site
+
+# Local dev files
+.venv
+.claude
+.DS_Store

tabnado-0.1.0/.github/dependabot.yml

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+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for more information:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+# https://containers.dev/guide/dependabot
+
+version: 2
+updates:
+ - package-ecosystem: "uv"
+   directory: "/"
+   schedule:
+     interval: weekly

tabnado-0.1.0/.github/workflows/build-container.yml

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+name: Container
+
+on:
+  release:
+    types: [published]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+      actions: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set lowercase image name
+        id: image
+        run: echo "name=ghcr.io/$(echo '${{ github.repository }}' | tr '[:upper:]' '[:lower:]')" >> $GITHUB_OUTPUT
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v4
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract Docker metadata
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ steps.image.outputs.name }}
+          tags: |
+            type=raw,value=latest
+            type=ref,event=tag
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Build and push
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max

tabnado-0.1.0/.github/workflows/deploy-docs.yml

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+name: Documentation
+
+on:
+  push:
+    branches:
+      - main
+
+permissions:
+  contents: write
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - uses: astral-sh/setup-uv@v2
+        with:
+          enable-cache: true
+
+      - id: cache-id
+        run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_OUTPUT
+
+      - uses: actions/cache@v4
+        with:
+          key: mkdocs-material-${{ steps.cache-id.outputs.cache_id }}
+          path: .cache
+          restore-keys: |
+            mkdocs-material-
+
+      - name: Build and deploy
+        run: |
+          uv run --with mkdocs-material mkdocs build
+          uv run --with mkdocs-material mkdocs gh-deploy --force

tabnado-0.1.0/.github/workflows/pypi.yml

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+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+  id-token: write
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - uses: astral-sh/setup-uv@v2
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.13'
+
+    - name: Build package
+      run: uv build
+
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@release/v1

tabnado-0.1.0/.github/workflows/python-tests.yml

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+name: Tests
+
+on:
+  push:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        test_target:
+          - tests/test_cli.py
+          - tests/test_peaks.py
+          - tests/test_pipeline_gandalf.py
+          - tests/test_pipeline_xgboost.py
+    env:
+      UV_PYTHON: "3.12"
+      PYTHONUNBUFFERED: "1"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+
+      - uses: astral-sh/setup-uv@v2
+        with:
+          enable-cache: true
+
+      - name: Install dependencies
+        run: |
+          uv sync --all-extras --frozen
+          uv pip install pytorch-tabular==1.2.0 --no-deps
+          uv pip install "pytorch-lightning>=2.0.0,<2.7.0" "torchmetrics>=0.10.0,<1.9.0"
+
+      - name: Run tests (${{ matrix.test_target }})
+        run: >-
+          uv run --python 3.12 pytest
+          -vv -s -rA
+          ${{ matrix.test_target }}

tabnado-0.1.0/.gitignore

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+# Python-generated files
+__pycache__/
+*.py[oc]
+build/
+dist/
+wheels/
+*.egg-info
+.pytest_cache
+.ruff_cache
+
+# Virtual environments
+.venv
+
+# Claude-related files
+.claude
+CLAUDE.md
+planning.md
+
+# System files
+.DS_Store
+.vscode/
+
+# Temporary files
+.pt_tmp
+
+# Output files
+site/
+test_output/
+wandb/
+params.yaml
+*.log

tabnado-0.1.0/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.9.10
+    hooks:
+      - id: ruff
+        args: [--fix, --select=I]
+      - id: ruff-format
+
+  - repo: local
+    hooks:
+      - id: uv-lock
+        name: uv lock
+        entry: bash -c 'uv lock && git add uv.lock'
+        language: system
+        pass_filenames: false
+        files: pyproject.toml

tabnado-0.1.0/Dockerfile

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+FROM python:3.12-slim
+
+ENV PYTHONDONTWRITEBYTECODE=1 \
+    PYTHONUNBUFFERED=1 \
+    PIP_NO_CACHE_DIR=1
+
+WORKDIR /app
+
+# System packages required by scientific Python wheels and common build steps.
+RUN apt-get update \
+    && apt-get install -y --no-install-recommends build-essential git \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install dependencies before copying source so this layer is cached
+# independently of code changes.
+RUN pip install --upgrade pip
+COPY pyproject.toml README.md ./
+RUN mkdir -p src/tabnado && touch src/tabnado/__init__.py
+RUN pip install . && pip install pytorch-tabular==1.2.0 --no-deps
+
+COPY . /app
+RUN pip install --no-deps .
+
+# Default command runs the full pipeline; pass --help or custom args at runtime.
+ENTRYPOINT ["tabnado-run"]