TINTOlib 1.2.2__tar.gz → 1.3.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (132) hide show
  1. {tintolib-1.2.2 → tintolib-1.3.1}/.gitignore +170 -170
  2. {tintolib-1.2.2 → tintolib-1.3.1}/LICENSE +201 -201
  3. {tintolib-1.2.2 → tintolib-1.3.1}/PKG-INFO +48 -22
  4. {tintolib-1.2.2 → tintolib-1.3.1}/README.md +374 -366
  5. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/abstractImageMethod.py +316 -316
  6. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/barGraph.py +118 -118
  7. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/base.py +127 -127
  8. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/bie.py +109 -109
  9. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/clusters.py +71 -40
  10. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/combination.py +126 -126
  11. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/deepInsight.py +142 -132
  12. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/distanceMatrix.py +84 -84
  13. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/featureWrap.py +176 -176
  14. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/fotomics.py +184 -185
  15. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/igtd.py +686 -665
  16. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/mappingMethod.py +100 -100
  17. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/paramImageMethod.py +220 -225
  18. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/refined.py +182 -171
  19. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/supertml.py +217 -214
  20. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/tinto.py +484 -484
  21. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/CustomTransformer.py +16 -16
  22. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/LogScaler.py +55 -55
  23. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/Toolbox.py +251 -251
  24. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/assigner.py +357 -353
  25. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/config.py +16 -16
  26. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/constants.py +51 -51
  27. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/geometry.py +57 -52
  28. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/mpiHill_UF.py +111 -111
  29. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/utils/paraHill.py +132 -132
  30. tintolib-1.3.1/pyproject.toml +72 -0
  31. tintolib-1.2.2/CITATION.cff +0 -39
  32. tintolib-1.2.2/Dataset/Multiclass/iris.csv +0 -151
  33. tintolib-1.2.2/Dataset/Regression/boston.csv +0 -507
  34. tintolib-1.2.2/Gemfile +0 -5
  35. tintolib-1.2.2/Gemfile.lock +0 -283
  36. tintolib-1.2.2/Papers Accepted/IEEE_JSTSP-TINTO_Hybrid_Neural_Networks.pdf +0 -0
  37. tintolib-1.2.2/Papers Accepted/INFUS-TINTO Use Case.pdf +0 -0
  38. tintolib-1.2.2/Papers Accepted/SoftwareX-TINTO Method.pdf +0 -0
  39. tintolib-1.2.2/Papers Accepted/SoftwareX-TINTOlib Library.pdf +16 -6686
  40. tintolib-1.2.2/Papers Accepted/TINTOlib-Benchmark-INFFUS.pdf +62 -21804
  41. tintolib-1.2.2/docs/.sass-cache/0bdba15b6d9b14ad176ecccceec543b5723d4a16/minima.scssc +0 -0
  42. tintolib-1.2.2/docs/.sass-cache/612f965de465c2fcff7de7ff3d41a706b9cd3d77/_base.scssc +0 -0
  43. tintolib-1.2.2/docs/.sass-cache/612f965de465c2fcff7de7ff3d41a706b9cd3d77/_layout.scssc +0 -0
  44. tintolib-1.2.2/docs/.sass-cache/612f965de465c2fcff7de7ff3d41a706b9cd3d77/_syntax-highlighting.scssc +0 -0
  45. tintolib-1.2.2/docs/.sass-cache/7995130582743275bf9ef216581ba1f64be550d0/_base.scssc +0 -0
  46. tintolib-1.2.2/docs/.sass-cache/7995130582743275bf9ef216581ba1f64be550d0/_layout.scssc +0 -0
  47. tintolib-1.2.2/docs/.sass-cache/7995130582743275bf9ef216581ba1f64be550d0/_syntax-highlighting.scssc +0 -0
  48. tintolib-1.2.2/docs/.sass-cache/ab63ac6cbbcf8f13c333c99c0c7d195aee5e7671/minima.scssc +0 -0
  49. tintolib-1.2.2/docs/Gemfile.lock +0 -4
  50. tintolib-1.2.2/docs/_config.yml +0 -18
  51. tintolib-1.2.2/docs/_data/datasets/binary/adult_cleaned/dataset.yml +0 -693
  52. tintolib-1.2.2/docs/_data/datasets/binary/bioresponse/dataset.yml +0 -433
  53. tintolib-1.2.2/docs/_data/datasets/binary/credit-approval/dataset.yml +0 -693
  54. tintolib-1.2.2/docs/_data/datasets/binary/dengue_chikunguya_bin/dataset.yml +0 -693
  55. tintolib-1.2.2/docs/_data/datasets/binary/nomao/dataset.yml +0 -693
  56. tintolib-1.2.2/docs/_data/datasets/binary/preprocessed_heloc/dataset.yml +0 -680
  57. tintolib-1.2.2/docs/_data/datasets/binary/qsar-biodeg/dataset.yml +0 -693
  58. tintolib-1.2.2/docs/_data/datasets/binary/sick_cleaned/dataset.yml +0 -693
  59. tintolib-1.2.2/docs/_data/datasets/multiclass/cmc/dataset.yml +0 -672
  60. tintolib-1.2.2/docs/_data/datasets/multiclass/cnae-9/dataset.yml +0 -479
  61. tintolib-1.2.2/docs/_data/datasets/multiclass/connect-4/dataset.yml +0 -661
  62. tintolib-1.2.2/docs/_data/datasets/multiclass/covtype/dataset.yml +0 -290
  63. tintolib-1.2.2/docs/_data/datasets/multiclass/dna/dataset.yml +0 -414
  64. tintolib-1.2.2/docs/_data/datasets/multiclass/gas-drift/dataset.yml +0 -496
  65. tintolib-1.2.2/docs/_data/datasets/multiclass/isolet/dataset.yml +0 -420
  66. tintolib-1.2.2/docs/_data/datasets/multiclass/mfeat-fourier/dataset.yml +0 -179
  67. tintolib-1.2.2/docs/_data/datasets/regression/boston/dataset.yml +0 -545
  68. tintolib-1.2.2/docs/_data/datasets/regression/california_housing/dataset.yml +0 -545
  69. tintolib-1.2.2/docs/_data/datasets/regression/geographical_origin_of_music/dataset.yml +0 -545
  70. tintolib-1.2.2/docs/_data/datasets/regression/geographical_origin_of_music/dataset_original.yml +0 -547
  71. tintolib-1.2.2/docs/_data/datasets/regression/health_insurance/dataset.yml +0 -441
  72. tintolib-1.2.2/docs/_data/datasets/regression/pumadyn32nh/dataset.yml +0 -545
  73. tintolib-1.2.2/docs/_data/datasets/regression/student_performance_por/dataset.yml +0 -545
  74. tintolib-1.2.2/docs/_data/datasets/regression/superconductivity/dataset.yml +0 -351
  75. tintolib-1.2.2/docs/_data/quick_check/binary.yml +0 -216
  76. tintolib-1.2.2/docs/_data/quick_check/multiclass.yml +0 -216
  77. tintolib-1.2.2/docs/_data/quick_check/regression.yml +0 -189
  78. tintolib-1.2.2/docs/_includes/gallery.html +0 -0
  79. tintolib-1.2.2/docs/_includes/mini-table.html +0 -0
  80. tintolib-1.2.2/docs/_includes/two-col.html +0 -0
  81. tintolib-1.2.2/docs/_site/assets/css/custom.scss +0 -15
  82. tintolib-1.2.2/docs/_site/assets/images/binary/dataset-4.png +0 -0
  83. tintolib-1.2.2/docs/_site/assets/images/multiclass/dataset-3.png +0 -0
  84. tintolib-1.2.2/docs/_site/assets/images/regression/dataset-1.png +0 -0
  85. tintolib-1.2.2/docs/_site/assets/images/regression/dataset-2.png +0 -0
  86. tintolib-1.2.2/docs/_site/assets/main.css +0 -1
  87. tintolib-1.2.2/docs/_site/assets/minima-social-icons.svg +0 -33
  88. tintolib-1.2.2/docs/_site/binary.html +0 -55904
  89. tintolib-1.2.2/docs/_site/feed.xml +0 -1
  90. tintolib-1.2.2/docs/_site/index.html +0 -116
  91. tintolib-1.2.2/docs/_site/multiclass.html +0 -37261
  92. tintolib-1.2.2/docs/_site/regression.html +0 -37669
  93. tintolib-1.2.2/docs/assets/css/custom.scss +0 -15
  94. tintolib-1.2.2/docs/assets/images/binary/dataset-4.png +0 -0
  95. tintolib-1.2.2/docs/assets/images/multiclass/dataset-3.png +0 -0
  96. tintolib-1.2.2/docs/assets/images/regression/dataset-1.png +0 -0
  97. tintolib-1.2.2/docs/assets/images/regression/dataset-2.png +0 -0
  98. tintolib-1.2.2/docs/assets/main.scss +0 -22
  99. tintolib-1.2.2/docs/binary.md +0 -306
  100. tintolib-1.2.2/docs/index.md +0 -33
  101. tintolib-1.2.2/docs/multiclass.md +0 -303
  102. tintolib-1.2.2/docs/regression.md +0 -298
  103. tintolib-1.2.2/examples/Generate_images-testing.ipynb +0 -433
  104. tintolib-1.2.2/examples/Pytorch_Regression-ViT.ipynb +0 -2905
  105. tintolib-1.2.2/examples/Pytorch_Regression-ViT.py +0 -666
  106. tintolib-1.2.2/examples/Pytorch_Regression_HyViT.ipynb +0 -2073
  107. tintolib-1.2.2/examples/TINTOlib-example.ipynb +0 -626
  108. tintolib-1.2.2/examples/Tensorflow_Classification_CNN.ipynb +0 -2421
  109. tintolib-1.2.2/examples/Tensorlflow_Multiclass_HyCNN.ipynb +0 -2385
  110. tintolib-1.2.2/examples/configs/clusters/boston.json +0 -106
  111. tintolib-1.2.2/examples/configs/clusters/iris.json +0 -107
  112. tintolib-1.2.2/examples/vit_pytorch/vit.py +0 -127
  113. tintolib-1.2.2/imgs/HybridViT.png +0 -0
  114. tintolib-1.2.2/imgs/Tabular-to-image-CNN.jpg +0 -0
  115. tintolib-1.2.2/imgs/blurring.png +0 -0
  116. tintolib-1.2.2/imgs/characteristic.png +0 -0
  117. tintolib-1.2.2/imgs/cnn.png +0 -0
  118. tintolib-1.2.2/imgs/hynn.png +0 -0
  119. tintolib-1.2.2/imgs/hynn_cla.png +0 -0
  120. tintolib-1.2.2/imgs/logo-oeg.png +0 -0
  121. tintolib-1.2.2/imgs/logo-uclm.png +0 -0
  122. tintolib-1.2.2/imgs/logo-uned-.jpg +0 -0
  123. tintolib-1.2.2/imgs/logo-upm.png +0 -0
  124. tintolib-1.2.2/imgs/logo.svg +0 -8
  125. tintolib-1.2.2/imgs/vit.png +0 -0
  126. tintolib-1.2.2/pyproject.toml +0 -42
  127. tintolib-1.2.2/requirements-example.txt +0 -14
  128. tintolib-1.2.2/requirements.txt +0 -10
  129. tintolib-1.2.2/scripts/generate_quick_check.py +0 -141
  130. tintolib-1.2.2/video/TINTOlib-video-En.mp4 +0 -0
  131. tintolib-1.2.2/video/TINTOlib-video-Es.mp4 +0 -0
  132. {tintolib-1.2.2 → tintolib-1.3.1}/TINTOlib/__init__.py +0 -0
@@ -1,170 +1,170 @@
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- # Misc
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- .DS_Store
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- HyNNImages/
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- SyntheticImages/
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- logs/
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- data/
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- scripts_logs/
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- objs.pkl
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-
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- # Byte-compiled / optimized / DLL files
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- **/__pycache__/
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- __pycache__/
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- *.py[cod]
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- *$py.class
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-
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- # C extensions
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- *.so
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-
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- # Distribution / packaging
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- .Python
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- build/
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- develop-eggs/
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- dist/
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- downloads/
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- eggs/
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- .eggs/
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- lib/
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- lib64/
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- parts/
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- sdist/
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- var/
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- wheels/
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- share/python-wheels/
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- *.egg-info/
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- .installed.cfg
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- *.egg
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- MANIFEST
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-
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- # PyInstaller
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- # Usually these files are written by a python script from a template
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- # before PyInstaller builds the exe, so as to inject date/other infos into it.
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- *.manifest
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- *.spec
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-
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- # Installer logs
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- pip-log.txt
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- pip-delete-this-directory.txt
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-
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- # Unit test / coverage reports
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- htmlcov/
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- .tox/
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- .nox/
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- .coverage
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- .coverage.*
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- .cache
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- nosetests.xml
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- coverage.xml
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- *.cover
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- *.py,cover
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- .hypothesis/
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- .pytest_cache/
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- cover/
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-
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- # Translations
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- *.mo
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- *.pot
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-
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- # Django stuff:
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- *.log
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- local_settings.py
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- db.sqlite3
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- db.sqlite3-journal
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-
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- # Flask stuff:
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- instance/
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- .webassets-cache
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-
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- # Scrapy stuff:
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- .scrapy
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-
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- # Sphinx documentation
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- docs/_build/
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-
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- # PyBuilder
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- .pybuilder/
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- target/
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-
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- # Jupyter Notebook
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- .ipynb_checkpoints
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-
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- # IPython
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- profile_default/
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- ipython_config.py
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-
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- # pyenv
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- # For a library or package, you might want to ignore these files since the code is
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- # intended to run in multiple environments; otherwise, check them in:
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- # .python-version
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-
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- # pipenv
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- # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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- # However, in case of collaboration, if having platform-specific dependencies or dependencies
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- # having no cross-platform support, pipenv may install dependencies that don't work, or not
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- # install all needed dependencies.
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- #Pipfile.lock
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-
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- # poetry
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- # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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- # This is especially recommended for binary packages to ensure reproducibility, and is more
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- # commonly ignored for libraries.
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- # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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- #poetry.lock
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-
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- # pdm
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- # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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- #pdm.lock
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- # pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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- # in version control.
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- # https://pdm.fming.dev/#use-with-ide
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- .pdm.toml
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-
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- # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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- __pypackages__/
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-
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- # Celery stuff
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- celerybeat-schedule
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- celerybeat.pid
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-
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- # SageMath parsed files
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- *.sage.py
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-
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- # Environments
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- .env
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- .venv
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- env/
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- venv/
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- ENV/
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- env.bak/
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- venv.bak/
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-
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- # Spyder project settings
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- .spyderproject
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- .spyproject
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-
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- # Rope project settings
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- .ropeproject
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-
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- # mkdocs documentation
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- /site
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-
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- # mypy
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- .mypy_cache/
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- .dmypy.json
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- dmypy.json
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-
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- # Pyre type checker
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- .pyre/
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-
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- # pytype static type analyzer
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- .pytype/
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-
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- # Cython debug symbols
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- cython_debug/
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-
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- # PyCharm
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- # JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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- # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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- # and can be added to the global gitignore or merged into this file. For a more nuclear
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- # option (not recommended) you can uncomment the following to ignore the entire idea folder.
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- .idea/
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+ # Misc
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+ .DS_Store
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+ HyNNImages/
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+ SyntheticImages/
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+ logs/
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+ data/
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+ scripts_logs/
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+ objs.pkl
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+
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+ # Byte-compiled / optimized / DLL files
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+ **/__pycache__/
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+ __pycache__/
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+ *.py[cod]
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+ *$py.class
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+
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+ # C extensions
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+ *.so
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+
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+ # Distribution / packaging
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+ .Python
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+ build/
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+ develop-eggs/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ share/python-wheels/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+ MANIFEST
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+
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+ # PyInstaller
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+ # Usually these files are written by a python script from a template
41
+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
42
+ *.manifest
43
+ *.spec
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+
45
+ # Installer logs
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+ pip-log.txt
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+ pip-delete-this-directory.txt
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+
49
+ # Unit test / coverage reports
50
+ htmlcov/
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+ .tox/
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+ .nox/
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+ .coverage
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+ .coverage.*
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+ .cache
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+ nosetests.xml
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+ coverage.xml
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+ *.cover
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+ *.py,cover
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+ .hypothesis/
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+ .pytest_cache/
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+ cover/
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+
64
+ # Translations
65
+ *.mo
66
+ *.pot
67
+
68
+ # Django stuff:
69
+ *.log
70
+ local_settings.py
71
+ db.sqlite3
72
+ db.sqlite3-journal
73
+
74
+ # Flask stuff:
75
+ instance/
76
+ .webassets-cache
77
+
78
+ # Scrapy stuff:
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+ .scrapy
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+
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+ # Sphinx documentation
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+ docs/_build/
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+
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+ # PyBuilder
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+ .pybuilder/
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+ target/
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+
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+ # Jupyter Notebook
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+ .ipynb_checkpoints
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+
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+ # IPython
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+ profile_default/
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+ ipython_config.py
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+
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+ # pyenv
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+ # For a library or package, you might want to ignore these files since the code is
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+ # intended to run in multiple environments; otherwise, check them in:
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+ # .python-version
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+
100
+ # pipenv
101
+ # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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+ # However, in case of collaboration, if having platform-specific dependencies or dependencies
103
+ # having no cross-platform support, pipenv may install dependencies that don't work, or not
104
+ # install all needed dependencies.
105
+ #Pipfile.lock
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+
107
+ # poetry
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+ # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
109
+ # This is especially recommended for binary packages to ensure reproducibility, and is more
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+ # commonly ignored for libraries.
111
+ # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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+ #poetry.lock
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+
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+ # pdm
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+ # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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+ #pdm.lock
117
+ # pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
118
+ # in version control.
119
+ # https://pdm.fming.dev/#use-with-ide
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+ .pdm.toml
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+
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+ # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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+ __pypackages__/
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+
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+ # Celery stuff
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+ celerybeat-schedule
127
+ celerybeat.pid
128
+
129
+ # SageMath parsed files
130
+ *.sage.py
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+
132
+ # Environments
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+ .env
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+ .venv
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+ env/
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+ venv/
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+ ENV/
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+ env.bak/
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+ venv.bak/
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+
141
+ # Spyder project settings
142
+ .spyderproject
143
+ .spyproject
144
+
145
+ # Rope project settings
146
+ .ropeproject
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+
148
+ # mkdocs documentation
149
+ /site
150
+
151
+ # mypy
152
+ .mypy_cache/
153
+ .dmypy.json
154
+ dmypy.json
155
+
156
+ # Pyre type checker
157
+ .pyre/
158
+
159
+ # pytype static type analyzer
160
+ .pytype/
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+
162
+ # Cython debug symbols
163
+ cython_debug/
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+
165
+ # PyCharm
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+ # JetBrains specific template is maintained in a separate JetBrains.gitignore that can
167
+ # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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+ # and can be added to the global gitignore or merged into this file. For a more nuclear
169
+ # option (not recommended) you can uncomment the following to ignore the entire idea folder.
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+ .idea/