TB2J 0.9.9.14__tar.gz → 0.9.9.15__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (117) hide show
  1. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/PKG-INFO +1 -1
  2. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_vampire.py +1 -1
  3. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/PKG-INFO +1 -1
  4. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_merge.py +9 -5
  5. tb2j-0.9.9.15/scripts/TB2J_plot_magnon_bands.py +27 -0
  6. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/setup.py +1 -1
  7. tb2j-0.9.9.14/scripts/TB2J_plot_magnon_bands.py +0 -7
  8. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/LICENSE +0 -0
  9. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/README.md +0 -0
  10. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/Jdownfolder.py +0 -0
  11. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/Jtensor.py +0 -0
  12. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/MAE.py +0 -0
  13. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/MAEGreen.py +0 -0
  14. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/Oiju.py +0 -0
  15. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/Oiju_epc.py +0 -0
  16. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/__init__.py +0 -0
  17. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/anisotropy.py +0 -0
  18. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/basis.py +0 -0
  19. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/citation.py +0 -0
  20. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/contour.py +0 -0
  21. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/density_matrix.py +0 -0
  22. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/epc.py +0 -0
  23. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/exchange.py +0 -0
  24. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/exchangeCL2.py +0 -0
  25. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/exchange_params.py +0 -0
  26. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/exchange_pert.py +0 -0
  27. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/exchange_qspace.py +0 -0
  28. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/external/__init__.py +0 -0
  29. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/external/p_tqdm.py +0 -0
  30. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/gpaw_wrapper.py +0 -0
  31. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/green.py +0 -0
  32. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/greentest.py +0 -0
  33. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/__init__.py +0 -0
  34. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/__init__.py +0 -0
  35. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/abacus_api.py +0 -0
  36. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/abacus_wrapper.py +0 -0
  37. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/gen_exchange_abacus.py +0 -0
  38. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/orbital_api.py +0 -0
  39. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/stru_api.py +0 -0
  40. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/test_density_matrix.py +0 -0
  41. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/test_read_HRSR.py +0 -0
  42. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/abacus/test_read_stru.py +0 -0
  43. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/gpaw_interface.py +0 -0
  44. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/lawaf_interface.py +0 -0
  45. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/manager.py +0 -0
  46. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/siesta_interface.py +0 -0
  47. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/interfaces/wannier90_interface.py +0 -0
  48. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/__init__.py +0 -0
  49. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_exchange.py +0 -0
  50. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_multibinit.py +0 -0
  51. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_tomsasd.py +0 -0
  52. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_txt.py +0 -0
  53. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_exchange/io_uppasd.py +0 -0
  54. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/io_merge.py +0 -0
  55. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/kpoints.py +0 -0
  56. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/__init__.py +0 -0
  57. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/io_exchange2.py +0 -0
  58. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/magnon3.py +0 -0
  59. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/magnon_band.py +0 -0
  60. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/magnon_dos.py +0 -0
  61. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/magnon_io.py +0 -0
  62. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/magnon_math.py +0 -0
  63. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/plot.py +0 -0
  64. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/plot_magnon_dos_cli.py +0 -0
  65. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/magnon/structure.py +0 -0
  66. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/__init__.py +0 -0
  67. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/auto_kpath.py +0 -0
  68. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/fermi.py +0 -0
  69. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/fibonacci_sphere.py +0 -0
  70. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/kR_convert.py +0 -0
  71. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/lowdin.py +0 -0
  72. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mathutils/rotate_spin.py +0 -0
  73. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/myTB.py +0 -0
  74. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/mycfr.py +0 -0
  75. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/orbital_magmom.py +0 -0
  76. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/orbmap.py +0 -0
  77. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/pauli.py +0 -0
  78. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/pert.py +0 -0
  79. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/plot.py +0 -0
  80. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/rotate_atoms.py +0 -0
  81. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/rotate_siestaDM.py +0 -0
  82. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/sisl_wrapper.py +0 -0
  83. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/__init__.py +0 -0
  84. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/base_parser.py +0 -0
  85. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/constants.py +0 -0
  86. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/hamiltonian.py +0 -0
  87. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/hamiltonian_terms.py +0 -0
  88. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/plot.py +0 -0
  89. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/qsolver.py +0 -0
  90. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/spin_api.py +0 -0
  91. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/spin_xml.py +0 -0
  92. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/spinham/supercell.py +0 -0
  93. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/symmetrize_J.py +0 -0
  94. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/tensor_rotate.py +0 -0
  95. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/thetaphi.py +0 -0
  96. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/utest.py +0 -0
  97. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/utils.py +0 -0
  98. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/versioninfo.py +0 -0
  99. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/wannier/__init__.py +0 -0
  100. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/wannier/w90_parser.py +0 -0
  101. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J/wannier/w90_tb_parser.py +0 -0
  102. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/SOURCES.txt +0 -0
  103. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/dependency_links.txt +0 -0
  104. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/entry_points.txt +0 -0
  105. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/requires.txt +0 -0
  106. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/TB2J.egg-info/top_level.txt +0 -0
  107. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_downfold.py +0 -0
  108. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_eigen.py +0 -0
  109. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_magnon.py +0 -0
  110. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_magnon2.py +0 -0
  111. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_magnon_dos.py +0 -0
  112. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_rotate.py +0 -0
  113. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/TB2J_rotateDM.py +0 -0
  114. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/abacus2J.py +0 -0
  115. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/siesta2J.py +0 -0
  116. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/scripts/wann2J.py +0 -0
  117. {tb2j-0.9.9.14 → tb2j-0.9.9.15}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: TB2J
3
- Version: 0.9.9.14
3
+ Version: 0.9.9.15
4
4
  Summary: TB2J: First principle to Heisenberg exchange J using tight-binding Green function method
5
5
  Author: Xu He
6
6
  Author-email: mailhexu@gmail.com
@@ -60,7 +60,7 @@ def write_vampire_unitcell_file(cls, fname):
60
60
  val = np.real(Jtensor[i, j] * 2.0 / J)
61
61
  if np.abs(val) < 1e-30:
62
62
  val = 0.0
63
- myfile.write(f"{val:<012.5e} ")
63
+ myfile.write(f"{val:< 12.5e} ")
64
64
  myfile.write("\n")
65
65
 
66
66
 
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: TB2J
3
- Version: 0.9.9.14
3
+ Version: 0.9.9.15
4
4
  Summary: TB2J: First principle to Heisenberg exchange J using tight-binding Green function method
5
5
  Author: Xu He
6
6
  Author-email: mailhexu@gmail.com
@@ -1,8 +1,8 @@
1
1
  #!/usr/bin/env python3
2
2
  import argparse
3
- import os
4
- import sys
3
+
5
4
  from TB2J.io_merge import merge
5
+ from TB2J.version_info import print_license
6
6
 
7
7
 
8
8
  def main():
@@ -32,14 +32,18 @@ def main():
32
32
  "--main_path",
33
33
  help="The path containning the reference structure.",
34
34
  type=str,
35
- default=None
35
+ default=None,
36
36
  )
37
37
 
38
38
  args = parser.parse_args()
39
39
  # merge(*(args.directories), args.type.strip().lower(), path=args.output_path)
40
40
  # merge(*(args.directories), method=args.type.strip().lower(), path=args.output_path)
41
- #merge2(args.directories, args.type.strip().lower(), path=args.output_path)
41
+ # merge2(args.directories, args.type.strip().lower(), path=args.output_path)
42
+ print_license()
43
+ print("Merging the TB2J results from the following directories: ", args.directories)
42
44
  merge(*args.directories, main_path=args.main_path, write_path=args.output_path)
45
+ print("Merging completed. The results are saved in:", args.output_path)
43
46
 
44
47
 
45
- main()
48
+ if __name__ == "__main__":
49
+ main()
@@ -0,0 +1,27 @@
1
+ #!/usr/bin/env python3
2
+
3
+
4
+ if __name__ == "__main__":
5
+ # add a warning messege that this functionality is under development and should not be used in production.
6
+ # make it visually distinct, e.g. with a different color or formatting.
7
+ import warnings
8
+
9
+ from TB2J.magnon.magnon3 import main
10
+
11
+ warnings.warn(
12
+ """
13
+ # !!!!!!!!!!!!!!!!!! WARNING: =============================
14
+ #
15
+ # This functionality is under development and should not be used in production.
16
+ # It is provided for testing and development purposes only.
17
+ # Please use with caution and report any issues to the developers.
18
+ #
19
+ # This warning will be removed in future releases.
20
+ # =====================================
21
+
22
+ """,
23
+ UserWarning,
24
+ stacklevel=2,
25
+ )
26
+ # Call the main function from the magnons module
27
+ main()
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  from setuptools import find_packages, setup
3
3
 
4
- __version__ = "0.9.9.14"
4
+ __version__ = "0.9.9.15"
5
5
 
6
6
  long_description = """TB2J is a Python package aimed to compute automatically the magnetic interactions (superexchange and Dzyaloshinskii-Moriya) between atoms of magnetic crystals from DFT Hamiltonian based on Wannier functions or Linear combination of atomic orbitals. It uses the Green's function method and take the local rigid spin rotation as a perturbation. The package can take the output from Wannier90, which is interfaced with many density functional theory codes or from codes based on localised orbitals. A minimal user input is needed, which allows for an easily integration into a high-throughput workflows. """
7
7
 
@@ -1,7 +0,0 @@
1
- #!/usr/bin/env python3
2
-
3
-
4
- if __name__ == "__main__":
5
- from TB2J.magnon.magnon3 import main
6
-
7
- main()
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