SleePyPhases 0.6.1__tar.gz → 0.6.2__tar.gz

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Files changed (60) hide show
  1. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/PKG-INFO +1 -1
  2. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/ExtractFeatures.py +5 -4
  3. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases.egg-info/PKG-INFO +1 -1
  4. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/setup.py +1 -1
  5. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/LICENSE +0 -0
  6. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/README.md +0 -0
  7. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/DataManipulation.py +0 -0
  8. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/EventScorer.py +0 -0
  9. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/FeatureExtraction.py +0 -0
  10. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/MultiScorer.py +0 -0
  11. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/Plot.py +0 -0
  12. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/Plugin.py +0 -0
  13. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/PreManipulation.py +0 -0
  14. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/RecordFeatureExtraction.py +0 -0
  15. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/Reporter.py +0 -0
  16. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/SignalPreprocessing.py +0 -0
  17. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/SleepMetaData.py +0 -0
  18. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/__init__.py +0 -0
  19. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/BuildDataset.py +0 -0
  20. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/DataAnalysis.py +0 -0
  21. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/DataReport.py +0 -0
  22. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Eval.py +0 -0
  23. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/EvalPlotExamples.py +0 -0
  24. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/EvalReport.py +0 -0
  25. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/ExportMetadataToMeticalDB.py +0 -0
  26. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Extract.py +0 -0
  27. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/ExtractEvents.py +0 -0
  28. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/ExtractRecordFeatures.py +0 -0
  29. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/GatherMetadata.py +0 -0
  30. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/LogCleanup.py +0 -0
  31. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/LogOverview.py +0 -0
  32. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Predict.py +0 -0
  33. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Setup.py +0 -0
  34. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/TestRun.py +0 -0
  35. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/ThresholdOptimisation.py +0 -0
  36. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Training.py +0 -0
  37. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/Validation.py +0 -0
  38. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/VisualizeConfig.py +0 -0
  39. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases/phases/__init__.py +0 -0
  40. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases.egg-info/SOURCES.txt +0 -0
  41. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases.egg-info/dependency_links.txt +0 -0
  42. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases.egg-info/requires.txt +0 -0
  43. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/SleePyPhases.egg-info/top_level.txt +0 -0
  44. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/pyproject.toml +0 -0
  45. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/setup.cfg +0 -0
  46. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/__init__.py +0 -0
  47. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/conftest.py +0 -0
  48. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/__init__.py +0 -0
  49. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_BuildDataset.py +0 -0
  50. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_BuildDatasetFolded.py +0 -0
  51. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_BuildDatasetSegments.py +0 -0
  52. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_DataManipulation.py +0 -0
  53. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_Eval.py +0 -0
  54. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_EventScorer.py +0 -0
  55. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_Extract.py +0 -0
  56. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_PreManipulation.py +0 -0
  57. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_RecordFeatureExtraction.py +0 -0
  58. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_RecordProcessor.py +0 -0
  59. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_Setup.py +0 -0
  60. {sleepyphases-0.6.1 → sleepyphases-0.6.2}/tests/unit/test_SignalPreprocessing.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SleePyPhases
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- Version: 0.6.1
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+ Version: 0.6.2
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  Summary: A framwork for creating deep learning pipelines for sleep data
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  Home-page: https://gitlab.com/sleep-is-all-you-need/sleepyphases
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  Author: Franz Ehrlich
@@ -166,7 +166,7 @@ class ExtractFeatures(Phase):
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  featureConfigs = self.getConfig("featureExtraction.features", [])
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  if featureNameDict != {}:
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  featureNames = list(featureNameDict.keys())
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- featureConfigs = [f for f in featureConfigs if f["name"] in featureNames]
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+ featureConfigs = [f for f in featureConfigs if f["name"] + "_checked" in featureNames]
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  recordLoader = RecordLoader.get()
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  recordSignal = None
@@ -181,9 +181,10 @@ class ExtractFeatures(Phase):
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  for featureConfig in featureConfigs:
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+ checkedCol = featureConfig["name"] + "_checked"
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  if recordSignal is None:
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  self.features.loc[recordId, "recordId"] = recordId
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- self.features.loc[recordId, featureConfig["name"]] = True
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+ self.features.loc[recordId, checkedCol] = True
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  self.registerData("features", self.features)
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  return {}
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@@ -198,7 +199,7 @@ class ExtractFeatures(Phase):
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  self.features.loc[idx, "recordId"] = recordId
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  self.features.loc[idx, "channel"] = c
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- self.features.loc[idx, featureConfig["name"]] = True
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+ self.features.loc[idx, checkedCol] = True
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  self.registerData("features", self.features)
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  idx = (recordId, channel) if channel is not None else recordId
@@ -211,7 +212,7 @@ class ExtractFeatures(Phase):
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  recordIds = metadata["recordId"]
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  forceCalculation = self.getConfig("featureExtraction.force", False)
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- reqFeatures = {f["name"]: True for f in self.getConfig("featureExtraction.features", [])}
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+ reqFeatures = {f["name"] + "_checked": True for f in self.getConfig("featureExtraction.features", [])}
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  recordId = self.getConfig("recordId", False)
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  recordIds = [recordId] if recordId else recordIds.iloc
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SleePyPhases
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- Version: 0.6.1
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+ Version: 0.6.2
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  Summary: A framwork for creating deep learning pipelines for sleep data
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  Home-page: https://gitlab.com/sleep-is-all-you-need/sleepyphases
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  Author: Franz Ehrlich
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setuptools.setup(
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  name="SleePyPhases",
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- version="v0.6.1"[1:],
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+ version="v0.6.2"[1:],
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  author="Franz Ehrlich",
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  author_email="fehrlichd@gmail.com",
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  description="A framwork for creating deep learning pipelines for sleep data",
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