SleePyPhases 0.3.1__tar.gz → 0.4.0__tar.gz

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Files changed (58) hide show
  1. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/PKG-INFO +1 -1
  2. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/PSGEventManager.py +1 -2
  3. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/RecordFeatureExtraction.py +1 -1
  4. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ExtractFeatures.py +4 -1
  5. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/PKG-INFO +1 -1
  6. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/setup.py +1 -1
  7. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/LICENSE +0 -0
  8. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/README.md +0 -0
  9. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/DataManipulation.py +0 -0
  10. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/EventScorer.py +0 -0
  11. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/FeatureExtraction.py +0 -0
  12. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/MultiScorer.py +0 -0
  13. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/Plot.py +0 -0
  14. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/Plugin.py +0 -0
  15. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/PreManipulation.py +0 -0
  16. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/Reporter.py +0 -0
  17. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/SignalPreprocessing.py +0 -0
  18. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/SleepMetaData.py +0 -0
  19. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/__init__.py +0 -0
  20. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/BuildDataset.py +0 -0
  21. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/DataAnalysis.py +0 -0
  22. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/DataReport.py +0 -0
  23. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/Eval.py +0 -0
  24. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/EvalPlotExamples.py +0 -0
  25. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/EvalReport.py +0 -0
  26. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ExportMetadataToMeticalDB.py +0 -0
  27. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/Extract.py +0 -0
  28. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ExtractEvents.py +0 -0
  29. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ExtractRecordFeatures.py +0 -0
  30. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/GatherMetadata.py +0 -0
  31. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/Setup.py +0 -0
  32. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/TestRun.py +0 -0
  33. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ThresholdOptimisation.py +0 -0
  34. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/Training.py +0 -0
  35. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/Validation.py +0 -0
  36. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/VisualizeConfig.py +0 -0
  37. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/__init__.py +0 -0
  38. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/SOURCES.txt +0 -0
  39. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/dependency_links.txt +0 -0
  40. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/requires.txt +0 -0
  41. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/top_level.txt +0 -0
  42. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/pyproject.toml +0 -0
  43. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/setup.cfg +0 -0
  44. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/__init__.py +0 -0
  45. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/conftest.py +0 -0
  46. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/__init__.py +0 -0
  47. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_BuildDataset.py +0 -0
  48. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_BuildDatasetFolded.py +0 -0
  49. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_BuildDatasetSegments.py +0 -0
  50. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_DataManipulation.py +0 -0
  51. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_Eval.py +0 -0
  52. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_EventScorer.py +0 -0
  53. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_Extract.py +0 -0
  54. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_PreManipulation.py +0 -0
  55. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_RecordFeatureExtraction.py +0 -0
  56. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_RecordProcessor.py +0 -0
  57. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_Setup.py +0 -0
  58. {sleepyphases-0.3.1 → sleepyphases-0.4.0}/tests/unit/test_SignalPreprocessing.py +0 -0
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SleePyPhases
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- Version: 0.3.1
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+ Version: 0.4.0
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  Summary: A framwork for creating deep learning pipelines for sleep data
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  Home-page: https://gitlab.com/sleep-is-all-you-need/sleepyphases
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  Author: Franz Ehrlich
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/PSGEventManager.py RENAMED
@@ -74,7 +74,7 @@ class PSGEventManager(EventManager):
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  "SlowEyeMovement",
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  "Spindle-eeg",
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  ],
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- "fail": [ # maximal 32 for 32bit integer
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+ "fail": [ # maximal 31 for 32bit integer
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  "workingSignal",
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  "fail-channel0",
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  "fail-channel1",
@@ -106,7 +106,6 @@ class PSGEventManager(EventManager):
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  "fail-channel27",
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  "fail-channel28",
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  "fail-channel29",
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- "fail-channel30",
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  ],
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  "limb": ["noneLegmovement", "LegMovement-Left", "LegMovement-Right", "LegMovement"],
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  "spo2": [
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/RecordFeatureExtraction.py RENAMED
@@ -270,4 +270,4 @@ class RecordFeatureExtraction(pyPhasesFeatureExtraction, Swappable):
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  # ret[f"cycle-{cycleNumber}-rem-duration"] = remTime
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  return ret
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-
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+
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases/phases/ExtractFeatures.py RENAMED
@@ -209,10 +209,13 @@ class ExtractFeatures(Phase):
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  self.features = None
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  metadata = self.project.getData("metadata", pd.DataFrame)
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  recordIds = metadata["recordId"]
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- forceCalculation = self.getConfig("featureExtraction.features", True)
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+ forceCalculation = self.getConfig("featureExtraction.force", False)
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  reqFeatures = {f["name"]: True for f in self.getConfig("featureExtraction.features", [])}
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+ recordId = self.getConfig("recordId", False)
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+ recordIds = [recordId] if recordId else recordIds.iloc
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+
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  for recordId in tqdm(recordIds.iloc):
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  if forceCalculation:
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  # the parameter forced has no meaning, it is just known to be not in the metadata, so the record will always be recalculated
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/SleePyPhases.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SleePyPhases
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- Version: 0.3.1
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+ Version: 0.4.0
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  Summary: A framwork for creating deep learning pipelines for sleep data
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  Home-page: https://gitlab.com/sleep-is-all-you-need/sleepyphases
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  Author: Franz Ehrlich
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setuptools.setup(
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  name="SleePyPhases",
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- version="v0.3.1"[1:],
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+ version="v0.4.0"[1:],
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  author="Franz Ehrlich",
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  author_email="fehrlichd@gmail.com",
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  description="A framwork for creating deep learning pipelines for sleep data",
{sleepyphases-0.3.1 → sleepyphases-0.4.0}/LICENSE RENAMED
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{sleepyphases-0.3.1 → sleepyphases-0.4.0}/README.md RENAMED
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{sleepyphases-0.3.1 → sleepyphases-0.4.0}/setup.cfg RENAMED
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