PyPI - SigProfilerExtractor - Versions diffs - 1.2.4__tar.gz → 1.2.5__tar.gz - Mend

SigProfilerExtractor 1.2.4tar.gz → 1.2.5tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (39) hide show

{sigprofilerextractor-1.2.4/SigProfilerExtractor.egg-info → sigprofilerextractor-1.2.5}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SigProfilerExtractor
-Version: 1.2.4
+Version: 1.2.5
 Summary: Extracts mutational signatures from mutational catalogues
 Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
 Author: S Mishu Ashiqul Islam
@@ -149,7 +149,7 @@ sigProfilerExtractor(input_type, out_put, input_data, reference_genome="GRCh37",
 |  | **nmf_tolerance** | Float | Value defines the tolerance to achieve to converge (default: `1e-15`).|
 | **Execution** |  |  |  |
 |  | **cpu** | Integer | The number of processors to be used to extract the signatures (default: all processors). |
-|  | **assignment_cpu** | Integer | The number of processors to be used for the final signature assignment step (default: all processors). This is independent of the `cpu` parameter. |
+|  | **assignment_cpu** | Integer | Number of processors to be used by SigProfilerAssignment for the final signature assignment step (default: all available). This is independent of the `cpu` parameter. |
 |  | **gpu** | Boolean | Defines if the GPU resource will used if available (default: `False`). If `True`, the GPU resources will be used in the computation. *Note: All available CPU processors are used by default, which may cause a memory error. This error can be resolved by reducing the number of CPU processes through the `cpu` parameter.*|
 |  | **batch_size** | Integer | Will be effective only if the GPU is used. Defines the number of NMF replicates to be performed by each CPU during the parallel processing (default: `1`). *Note: For `batch_size` values greater than 1, each NMF replicate will update until `max_nmf_iterations` is reached.*|
 | **Solution Estimation Thresholds** |  |  |  |

{sigprofilerextractor-1.2.4 → sigprofilerextractor-1.2.5}/README.md RENAMED Viewed

@@ -116,7 +116,7 @@ sigProfilerExtractor(input_type, out_put, input_data, reference_genome="GRCh37",
 |  | **nmf_tolerance** | Float | Value defines the tolerance to achieve to converge (default: `1e-15`).|
 | **Execution** |  |  |  |
 |  | **cpu** | Integer | The number of processors to be used to extract the signatures (default: all processors). |
-|  | **assignment_cpu** | Integer | The number of processors to be used for the final signature assignment step (default: all processors). This is independent of the `cpu` parameter. |
+|  | **assignment_cpu** | Integer | Number of processors to be used by SigProfilerAssignment for the final signature assignment step (default: all available). This is independent of the `cpu` parameter. |
 |  | **gpu** | Boolean | Defines if the GPU resource will used if available (default: `False`). If `True`, the GPU resources will be used in the computation. *Note: All available CPU processors are used by default, which may cause a memory error. This error can be resolved by reducing the number of CPU processes through the `cpu` parameter.*|
 |  | **batch_size** | Integer | Will be effective only if the GPU is used. Defines the number of NMF replicates to be performed by each CPU during the parallel processing (default: `1`). *Note: For `batch_size` values greater than 1, each NMF replicate will update until `max_nmf_iterations` is reached.*|
 | **Solution Estimation Thresholds** |  |  |  |

sigprofilerextractor-1.2.5/SigProfilerExtractor/version.py ADDED Viewed

@@ -0,0 +1,7 @@
+# THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
+short_version = '1.2.5'
+version = '1.2.5'
+Update = 'v1.2.5: Add automated Docker build and publish pipeline'

{sigprofilerextractor-1.2.4 → sigprofilerextractor-1.2.5/SigProfilerExtractor.egg-info}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SigProfilerExtractor
-Version: 1.2.4
+Version: 1.2.5
 Summary: Extracts mutational signatures from mutational catalogues
 Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
 Author: S Mishu Ashiqul Islam
@@ -149,7 +149,7 @@ sigProfilerExtractor(input_type, out_put, input_data, reference_genome="GRCh37",
 |  | **nmf_tolerance** | Float | Value defines the tolerance to achieve to converge (default: `1e-15`).|
 | **Execution** |  |  |  |
 |  | **cpu** | Integer | The number of processors to be used to extract the signatures (default: all processors). |
-|  | **assignment_cpu** | Integer | The number of processors to be used for the final signature assignment step (default: all processors). This is independent of the `cpu` parameter. |
+|  | **assignment_cpu** | Integer | Number of processors to be used by SigProfilerAssignment for the final signature assignment step (default: all available). This is independent of the `cpu` parameter. |
 |  | **gpu** | Boolean | Defines if the GPU resource will used if available (default: `False`). If `True`, the GPU resources will be used in the computation. *Note: All available CPU processors are used by default, which may cause a memory error. This error can be resolved by reducing the number of CPU processes through the `cpu` parameter.*|
 |  | **batch_size** | Integer | Will be effective only if the GPU is used. Defines the number of NMF replicates to be performed by each CPU during the parallel processing (default: `1`). *Note: For `batch_size` values greater than 1, each NMF replicate will update until `max_nmf_iterations` is reached.*|
 | **Solution Estimation Thresholds** |  |  |  |

{sigprofilerextractor-1.2.4 → sigprofilerextractor-1.2.5}/setup.py RENAMED Viewed

@@ -8,7 +8,7 @@ import subprocess
 if os.path.exists("dist"):
     shutil.rmtree("dist")
-VERSION = "1.2.4"
+VERSION = "1.2.5"
 with open("README.md") as f:
@@ -21,7 +21,7 @@ def write_version_py(filename="SigProfilerExtractor/version.py"):
 # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v1.2.4: Added assignment_cpu parameter for SigProfilerAssignment v1.0.0 support.'
+Update = 'v1.2.5: Add automated Docker build and publish pipeline'
     """
     fh = open(filename, "w")

sigprofilerextractor-1.2.4/SigProfilerExtractor/version.py DELETED Viewed

@@ -1,7 +0,0 @@
-# THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
-short_version = '1.2.4'
-version = '1.2.4'
-Update = 'v1.2.4: Added assignment_cpu parameter for SigProfilerAssignment v1.0.0 support.'