SigProfilerExtractor 1.2.0__tar.gz → 1.2.1__tar.gz

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Files changed (39) hide show
  1. {sigprofilerextractor-1.2.0/SigProfilerExtractor.egg-info → sigprofilerextractor-1.2.1}/PKG-INFO +3 -2
  2. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/sigprofilerextractor_cli.py +1 -1
  3. sigprofilerextractor-1.2.1/SigProfilerExtractor/version.py +7 -0
  4. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1/SigProfilerExtractor.egg-info}/PKG-INFO +3 -2
  5. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/SOURCES.txt +1 -0
  6. sigprofilerextractor-1.2.1/pyproject.toml +3 -0
  7. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/setup.py +2 -2
  8. sigprofilerextractor-1.2.0/SigProfilerExtractor/version.py +0 -7
  9. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/LICENSE.txt +0 -0
  10. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/MANIFEST.in +0 -0
  11. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/README.md +0 -0
  12. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/__init__.py +0 -0
  13. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/controllers/cli_controller.py +0 -0
  14. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/CNVInput/Battenberg_test.tsv +0 -0
  15. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/CSVInput/csv_example.csv +0 -0
  16. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/MatObjInput/21_breast_WGS_substitutions.mat +0 -0
  17. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/ReferenceFiles/CNV_features.tsv +0 -0
  18. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/ReferenceFiles/CN_classes_dictionary.txt +0 -0
  19. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/TextInput/Samples_CNV.txt +0 -0
  20. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/TextInput/Samples_DBS.txt +0 -0
  21. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/TextInput/Samples_ID.txt +0 -0
  22. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/TextInput/Samples_SBS.txt +0 -0
  23. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/TextInput/Samples_SV.txt +0 -0
  24. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/VCFInput/PD3851a.vcf +0 -0
  25. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/VCFInput/PD3890a.vcf +0 -0
  26. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/VCFInput/PD3904a.vcf +0 -0
  27. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/VCFInput/PD3905a.vcf +0 -0
  28. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/data/VCFInput/PD3945a.vcf +0 -0
  29. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/estimate_best_solution.py +0 -0
  30. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/nmf_cpu.py +0 -0
  31. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/nmf_gpu.py +0 -0
  32. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/sigpro.py +0 -0
  33. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/subroutines.py +0 -0
  34. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/dependency_links.txt +0 -0
  35. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/entry_points.txt +0 -0
  36. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/not-zip-safe +0 -0
  37. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/requires.txt +0 -0
  38. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/top_level.txt +0 -0
  39. {sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/setup.cfg +0 -0
{sigprofilerextractor-1.2.0/SigProfilerExtractor.egg-info → sigprofilerextractor-1.2.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: SigProfilerExtractor
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- Version: 1.2.0
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+ Version: 1.2.1
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  Summary: Extracts mutational signatures from mutational catalogues
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  Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
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  Author: S Mishu Ashiqul Islam
@@ -26,6 +26,7 @@ Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
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  Dynamic: license
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+ Dynamic: license-file
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  Dynamic: requires-dist
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  Dynamic: requires-python
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  Dynamic: summary
{sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor/sigprofilerextractor_cli.py RENAMED
@@ -11,7 +11,7 @@ def main_function():
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  if len(sys.argv) < 2 or sys.argv[1].lower() not in commands:
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  print_usage(commands)
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- sys.exit(1)
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+ return
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  command = sys.argv[1].lower()
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  args = sys.argv[2:]
sigprofilerextractor-1.2.1/SigProfilerExtractor/version.py ADDED
@@ -0,0 +1,7 @@
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+
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+ # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
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+ short_version = '1.2.1'
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+ version = '1.2.1'
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+ Update = 'v1.2.1: Fix CLI non-zero exit code issue'
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+
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+
{sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1/SigProfilerExtractor.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: SigProfilerExtractor
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- Version: 1.2.0
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+ Version: 1.2.1
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  Summary: Extracts mutational signatures from mutational catalogues
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  Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
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  Author: S Mishu Ashiqul Islam
@@ -26,6 +26,7 @@ Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
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  Dynamic: license
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+ Dynamic: license-file
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  Dynamic: requires-dist
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  Dynamic: requires-python
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  Dynamic: summary
{sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/SigProfilerExtractor.egg-info/SOURCES.txt RENAMED
@@ -1,6 +1,7 @@
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  LICENSE.txt
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  MANIFEST.in
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  README.md
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+ pyproject.toml
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  setup.py
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  SigProfilerExtractor/__init__.py
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  SigProfilerExtractor/estimate_best_solution.py
sigprofilerextractor-1.2.1/pyproject.toml ADDED
@@ -0,0 +1,3 @@
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+ [build-system]
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+ requires = ["setuptools>=61", "wheel", "build"]
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+ build-backend = "setuptools.build_meta"
{sigprofilerextractor-1.2.0 → sigprofilerextractor-1.2.1}/setup.py RENAMED
@@ -8,7 +8,7 @@ import subprocess
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  if os.path.exists("dist"):
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  shutil.rmtree("dist")
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- VERSION = "1.2.0"
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+ VERSION = "1.2.1"
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  with open("README.md") as f:
@@ -21,7 +21,7 @@ def write_version_py(filename="SigProfilerExtractor/version.py"):
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  # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
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  short_version = '%(version)s'
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  version = '%(version)s'
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- Update = 'Upgrade v1.2.0: Require Pandas and Numpy >= 2.0.0 and Python >= 3.9'
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+ Update = 'v1.2.1: Fix CLI non-zero exit code issue'
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  """
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  fh = open(filename, "w")
sigprofilerextractor-1.2.0/SigProfilerExtractor/version.py DELETED
@@ -1,7 +0,0 @@
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-
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- # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
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- short_version = '1.2.0'
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- version = '1.2.0'
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- Update = 'Upgrade v1.2.0: Require Pandas and Numpy >= 2.0.0 and Python >= 3.9'
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-
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-