SigProfilerAssignment 1.0.0__tar.gz → 1.0.2__tar.gz

{sigprofilerassignment-1.0.0/SigProfilerAssignment.egg-info → sigprofilerassignment-1.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SigProfilerAssignment
-Version: 1.0.0
+Version: 1.0.2
 Summary: Mutational signatures attribution and decomposition tool
 Home-page: https://github.com/AlexandrovLab/SigProfilerAssignment.git
 Author: Raviteja Vangara

{sigprofilerassignment-1.0.0 → sigprofilerassignment-1.0.2}/SigProfilerAssignment/decomposition.py

@@ -177,6 +177,8 @@ def record_parameters(sysdata, execution_parameters, start_time):
         sysdata.write("\tsamples: {}\n".format(execution_parameters["samples"]))
     else:
         sysdata.write("\tsamples: {}\n".format(type(execution_parameters["samples"])))
+
+    sysdata.write("\tcpu: {}\n".format(execution_parameters["cpu"]))
     if execution_parameters["volume"] is not None:
         sysdata.write("\tvolume: {}\n".format(execution_parameters["volume"]))
     sysdata.write(
@@ -498,6 +500,7 @@ def spa_analyze(
         "export_probabilities": export_probabilities,
         "make_plots": make_plots,
         "volume": volume,
+        "cpu": cpu,
     }
 
     if make_metadata:
@@ -686,7 +689,7 @@ def spa_analyze(
                 denovo_refit_option=denovo_refit_option,
                 exome=exome,
                 volume=volume,
-                cpu=-1,
+                cpu=cpu,
             )
 
         else:
@@ -695,7 +698,6 @@ def spa_analyze(
             signature_stats = devopts["signature_stats"]
             sequence = devopts["sequence"]
             processSTE = devopts["processSTE"]
-            cpu_extractor = devopts["cpu"]
 
             exposureAvg = sub.make_final_solution(
                 processAvg,
@@ -727,7 +729,7 @@ def spa_analyze(
                 denovo_refit_option=denovo_refit_option,
                 exome=exome,
                 volume=volume,
-                cpu=cpu_extractor,
+                cpu=cpu,
             )
 
         if make_metadata:

sigprofilerassignment-1.0.2/SigProfilerAssignment/version.py

@@ -0,0 +1,7 @@
+
+# THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
+short_version = '1.0.2'
+version = '1.0.2'
+Update = 'v1.0.2: Add automated Docker build and publish pipeline'
+
+    

{sigprofilerassignment-1.0.0 → sigprofilerassignment-1.0.2/SigProfilerAssignment.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SigProfilerAssignment
-Version: 1.0.0
+Version: 1.0.2
 Summary: Mutational signatures attribution and decomposition tool
 Home-page: https://github.com/AlexandrovLab/SigProfilerAssignment.git
 Author: Raviteja Vangara

{sigprofilerassignment-1.0.0 → sigprofilerassignment-1.0.2}/setup.py

@@ -6,7 +6,7 @@ import os
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = "1.0.0"
+VERSION = "1.0.2"
 
 
 def write_version_py(filename="SigProfilerAssignment/version.py"):
@@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v1.0.0:  Parallel version for SigProfilerAssignment'
+Update = 'v1.0.2: Add automated Docker build and publish pipeline'
 
     """
     fh = open(filename, "w")

sigprofilerassignment-1.0.0/SigProfilerAssignment/version.py

@@ -1,7 +0,0 @@
-
-# THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
-short_version = '1.0.0'
-version = '1.0.0'
-Update = 'v1.0.0:  Parallel version for SigProfilerAssignment'
-
-