SigProfilerAssignment 0.1.7__tar.gz → 0.1.8__tar.gz

{SigProfilerAssignment-0.1.7/SigProfilerAssignment.egg-info → SigProfilerAssignment-0.1.8}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: SigProfilerAssignment
-Version: 0.1.7
+Version: 0.1.8
 Summary: Mutational signatures attribution and decomposition tool
 Home-page: https://github.com/AlexandrovLab/SigProfilerAssignment.git
 Author: Raviteja Vangara

{SigProfilerAssignment-0.1.7 → SigProfilerAssignment-0.1.8}/SigProfilerAssignment/decompose_subroutines.py

@@ -9,19 +9,12 @@ import string
 import numpy as np
 import os, sys
 
-# from matplot,pdblib.backends.backend_pdf import PdfPages
 import pandas as pd
 import matplotlib.pyplot as plt
 
 plt.switch_backend("agg")
 from matplotlib.backends.backend_pdf import PdfPages
 
-# from sklearn import metrics
-# import time
-# import multiprocessing
-# from multiprocessing import current_process
-# from functools import partial
-# from numpy import linalg as LA
 import sigProfilerPlotting as plot
 from SigProfilerAssignment.DecompositionPlots import PlotDecomposition as sp
 from sigProfilerPlotting import plotActivity as plot_ac
@@ -30,7 +23,6 @@ import string
 import pypdf
 import scipy
 
-# import SigProfilerAssignment as sspro
 from pypdf import PdfMerger
 import SigProfilerAssignment as spa
 from SigProfilerAssignment import single_sample as ss

{SigProfilerAssignment-0.1.7 → SigProfilerAssignment-0.1.8}/SigProfilerAssignment/decomposition.py

@@ -6,13 +6,10 @@ Created on Sun May 19 12:21:06 2019
 @author: mishugeb
 """
 
-# from SigProfilerExtractor import subroutines as sub
-
 from cmath import cos
 import datetime
 import platform
 
-# from torch import sign
 from SigProfilerAssignment import decompose_subroutines as sub
 from SigProfilerAssignment.DecompositionPlots import PlotDecomposition as plot_decomp
 import SigProfilerAssignment

SigProfilerAssignment-0.1.8/SigProfilerAssignment/version.py

@@ -0,0 +1,8 @@
+
+# THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
+short_version = '0.1.8'
+version = '0.1.8'
+Update = 'v0.1.8: Add Dockerfile and remove uncessary dependencies'
+
+    
+    

{SigProfilerAssignment-0.1.7 → SigProfilerAssignment-0.1.8/SigProfilerAssignment.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: SigProfilerAssignment
-Version: 0.1.7
+Version: 0.1.8
 Summary: Mutational signatures attribution and decomposition tool
 Home-page: https://github.com/AlexandrovLab/SigProfilerAssignment.git
 Author: Raviteja Vangara

SigProfilerAssignment-0.1.8/SigProfilerAssignment.egg-info/requires.txt

@@ -0,0 +1,12 @@
+scipy>=1.6.3
+numpy<2.0.0,>=1.21.2
+pandas<2.0.0,>=1.2.4
+SigProfilerMatrixGenerator>=1.2.28
+sigProfilerPlotting>=1.3.24
+reportlab>=3.5.42
+pypdf>=3.1.0
+alive_progress>=2.4.1
+PyMuPDF>=1.21.0
+
+[tests]
+pytest

{SigProfilerAssignment-0.1.7 → SigProfilerAssignment-0.1.8}/setup.py

@@ -6,7 +6,7 @@ import os
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = "0.1.7"
+VERSION = "0.1.8"
 
 
 def write_version_py(filename="SigProfilerAssignment/version.py"):
@@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v0.1.7: Update CLI, add pytest, and update pypdf dependency.'
+Update = 'v0.1.8: Add Dockerfile and remove uncessary dependencies'
 
     
     """
@@ -34,18 +34,14 @@ with open("README.md") as f:
 
 requirements = [
     "scipy>=1.6.3",
-    "numpy>=1.21.2",
+    "numpy>=1.21.2,<2.0.0",
     "pandas>=1.2.4,<2.0.0",
-    "SigProfilerMatrixGenerator>=1.2.17",
-    "sigProfilerPlotting>=1.3.23",
-    "statsmodels>=0.9.0",
-    "scikit-learn>=0.24.2",
-    "psutil>=5.6.1",
+    "SigProfilerMatrixGenerator>=1.2.28",
+    "sigProfilerPlotting>=1.3.24",
     "reportlab>=3.5.42",
     "pypdf>=3.1.0",
     "alive_progress>=2.4.1",
-    "pdf2image>=1.16.0",
-    "PyMuPDF>=1.21.0",
+    "PyMuPDF>=1.21.0",  # required for package "fitz"
 ]
 
 write_version_py()

SigProfilerAssignment-0.1.7/SigProfilerAssignment/version.py

@@ -1,8 +0,0 @@
-
-# THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
-short_version = '0.1.7'
-version = '0.1.7'
-Update = 'v0.1.7: Update CLI, add pytest, and update pypdf dependency.'
-
-    
-    

SigProfilerAssignment-0.1.7/SigProfilerAssignment.egg-info/requires.txt

@@ -1,16 +0,0 @@
-scipy>=1.6.3
-numpy>=1.21.2
-pandas<2.0.0,>=1.2.4
-SigProfilerMatrixGenerator>=1.2.17
-sigProfilerPlotting>=1.3.23
-statsmodels>=0.9.0
-scikit-learn>=0.24.2
-psutil>=5.6.1
-reportlab>=3.5.42
-pypdf>=3.1.0
-alive_progress>=2.4.1
-pdf2image>=1.16.0
-PyMuPDF>=1.21.0
-
-[tests]
-pytest