SURE-tools 4.0.6__tar.gz → 4.0.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {sure_tools-4.0.6 → sure_tools-4.0.8}/PKG-INFO +1 -1
  2. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE_nsf.py +3 -3
  3. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE_vae.py +3 -3
  4. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/PKG-INFO +1 -1
  5. {sure_tools-4.0.6 → sure_tools-4.0.8}/setup.py +1 -1
  6. {sure_tools-4.0.6 → sure_tools-4.0.8}/LICENSE +0 -0
  7. {sure_tools-4.0.6 → sure_tools-4.0.8}/README.md +0 -0
  8. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE.py +0 -0
  9. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SUREMO.py +0 -0
  10. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE_vanilla.py +0 -0
  11. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/__init__.py +0 -0
  12. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/atac/utils.py +0 -0
  14. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/dist/__init__.py +0 -0
  15. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/dist/negbinomial.py +0 -0
  16. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/graph/__init__.py +0 -0
  17. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/graph/graph_utils.py +0 -0
  18. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/utils/__init__.py +0 -0
  19. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/utils/custom_mlp.py +0 -0
  20. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/utils/label.py +0 -0
  21. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/utils/queue.py +0 -0
  22. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/utils/utils.py +0 -0
  23. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/SOURCES.txt +0 -0
  24. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/dependency_links.txt +0 -0
  25. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/requires.txt +0 -0
  26. {sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/top_level.txt +0 -0
  27. {sure_tools-4.0.6 → sure_tools-4.0.8}/setup.cfg +0 -0
{sure_tools-4.0.6 → sure_tools-4.0.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 4.0.6
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+ Version: 4.0.8
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE_nsf.py RENAMED
@@ -287,7 +287,7 @@ class SURENF(nn.Module):
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  )
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  self.decoder_log_mu = MLP(
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- [self.latent_dim+self.latent_dim+self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
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+ [self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
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  activation=activate_fct,
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  output_activation=None,
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  post_layer_fct=post_layer_fct,
@@ -434,7 +434,7 @@ class SURENF(nn.Module):
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  else:
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  zfs = torch.zeros_like(zs)
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- log_mu = self.decoder_log_mu([zs+zcs,zps,zfs])
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+ log_mu = self.decoder_log_mu(zs+zcs+zps+zfs)
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  if self.loss_func in ['bernoulli']:
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  log_theta = log_mu
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  elif self.loss_func in ['negbinomial']:
@@ -692,7 +692,7 @@ class SURENF(nn.Module):
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  zfs = torch.zeros_like(z_basal)
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- log_mu = self.decoder_log_mu([z_basal+zcs, zps, zfs])
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+ log_mu = self.decoder_log_mu(z_basal+zcs+zps+zfs)
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  if self.loss_func == 'bernoulli':
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  counts = dist.Bernoulli(logits=log_mu).to_event(1).mean
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  else:
{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE_vae.py RENAMED
@@ -297,7 +297,7 @@ class SUREVAE(nn.Module):
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  )
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  self.decoder_log_mu = MLP(
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- [self.latent_dim+self.latent_dim+self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
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+ [self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
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  activation=activate_fct,
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  output_activation=None,
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  post_layer_fct=post_layer_fct,
@@ -444,7 +444,7 @@ class SUREVAE(nn.Module):
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  else:
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  zfs = torch.zeros_like(zs)
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- log_mu = self.decoder_log_mu([zs+zcs,zps,zfs])
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+ log_mu = self.decoder_log_mu(zs+zcs+zps+zfs)
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  if self.loss_func in ['bernoulli']:
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  log_theta = log_mu
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  elif self.loss_func in ['negbinomial']:
@@ -707,7 +707,7 @@ class SUREVAE(nn.Module):
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  zfs = torch.zeros_like(z_basal)
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- log_mu = self.decoder_log_mu([z_basal+zcs,zps,zfs])
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+ log_mu = self.decoder_log_mu(z_basal+zcs+zps+zfs)
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  if self.loss_func == 'bernoulli':
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  counts = dist.Bernoulli(logits=log_mu).to_event(1).mean
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  else:
{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 4.0.6
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+ Version: 4.0.8
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-4.0.6 → sure_tools-4.0.8}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='4.0.6',
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+ version='4.0.8',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-4.0.6 → sure_tools-4.0.8}/LICENSE RENAMED
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{sure_tools-4.0.6 → sure_tools-4.0.8}/README.md RENAMED
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{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SURE.py RENAMED
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{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/SUREMO.py RENAMED
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{sure_tools-4.0.6 → sure_tools-4.0.8}/SURE/__init__.py RENAMED
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{sure_tools-4.0.6 → sure_tools-4.0.8}/setup.cfg RENAMED
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