SURE-tools 4.0.0__tar.gz → 4.0.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {sure_tools-4.0.0 → sure_tools-4.0.1}/PKG-INFO +1 -1
  2. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE_vae.py +3 -3
  3. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-4.0.0 → sure_tools-4.0.1}/setup.py +1 -1
  5. {sure_tools-4.0.0 → sure_tools-4.0.1}/LICENSE +0 -0
  6. {sure_tools-4.0.0 → sure_tools-4.0.1}/README.md +0 -0
  7. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE.py +0 -0
  8. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SUREMO.py +0 -0
  9. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE_nsf.py +0 -0
  10. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE_vanilla.py +0 -0
  11. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/__init__.py +0 -0
  12. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/atac/utils.py +0 -0
  14. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/dist/__init__.py +0 -0
  15. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/dist/negbinomial.py +0 -0
  16. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/graph/__init__.py +0 -0
  17. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/graph/graph_utils.py +0 -0
  18. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/utils/__init__.py +0 -0
  19. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/utils/custom_mlp.py +0 -0
  20. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/utils/label.py +0 -0
  21. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/utils/queue.py +0 -0
  22. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/utils/utils.py +0 -0
  23. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/SOURCES.txt +0 -0
  24. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/dependency_links.txt +0 -0
  25. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/requires.txt +0 -0
  26. {sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/top_level.txt +0 -0
  27. {sure_tools-4.0.0 → sure_tools-4.0.1}/setup.cfg +0 -0
{sure_tools-4.0.0 → sure_tools-4.0.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 4.0.0
3
+ Version: 4.0.1
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE_vae.py RENAMED
@@ -294,7 +294,7 @@ class SUREVAE(nn.Module):
294
294
  )
295
295
 
296
296
  self.decoder_log_mu = MLP(
297
- [self.latent_dim+self.latent_dim+self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
297
+ [self.latent_dim] + self.decoder_hidden_layers + [self.input_dim],
298
298
  activation=activate_fct,
299
299
  output_activation=None,
300
300
  post_layer_fct=post_layer_fct,
@@ -436,7 +436,7 @@ class SUREVAE(nn.Module):
436
436
  else:
437
437
  zfs = torch.zeros_like(zs)
438
438
 
439
- log_mu = self.decoder_log_mu([zs+zcs,zps,zfs])
439
+ log_mu = self.decoder_log_mu(zs+zcs+zps+zfs)
440
440
  if self.loss_func in ['bernoulli']:
441
441
  log_theta = log_mu
442
442
  elif self.loss_func in ['negbinomial']:
@@ -699,7 +699,7 @@ class SUREVAE(nn.Module):
699
699
 
700
700
  zfs = torch.zeros_like(z_basal)
701
701
 
702
- log_mu = self.decoder_log_mu([z_basal+zcs, zps, zfs])
702
+ log_mu = self.decoder_log_mu(z_basal+zcs+zps+zfs)
703
703
  if self.loss_func == 'bernoulli':
704
704
  counts = dist.Bernoulli(logits=log_mu).to_event(1).mean
705
705
  else:
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 4.0.0
3
+ Version: 4.0.1
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-4.0.0 → sure_tools-4.0.1}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='4.0.0',
8
+ version='4.0.1',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-4.0.0 → sure_tools-4.0.1}/LICENSE RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/README.md RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE.py RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SUREMO.py RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/SURE_nsf.py RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/SURE/__init__.py RENAMED
File without changes
{sure_tools-4.0.0 → sure_tools-4.0.1}/setup.cfg RENAMED
File without changes