SURE-tools 3.6.12__tar.gz → 3.6.14__tar.gz

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Files changed (27) hide show
  1. {sure_tools-3.6.12 → sure_tools-3.6.14}/PKG-INFO +1 -1
  2. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE_nsf.py +1 -4
  3. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE_vae.py +1 -4
  4. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/PKG-INFO +1 -1
  5. {sure_tools-3.6.12 → sure_tools-3.6.14}/setup.py +1 -1
  6. {sure_tools-3.6.12 → sure_tools-3.6.14}/LICENSE +0 -0
  7. {sure_tools-3.6.12 → sure_tools-3.6.14}/README.md +0 -0
  8. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE.py +0 -0
  9. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SUREMO.py +0 -0
  10. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE_vanilla.py +0 -0
  11. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/__init__.py +0 -0
  12. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/atac/utils.py +0 -0
  14. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/dist/__init__.py +0 -0
  15. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/dist/negbinomial.py +0 -0
  16. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/graph/__init__.py +0 -0
  17. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/graph/graph_utils.py +0 -0
  18. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/utils/__init__.py +0 -0
  19. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/utils/custom_mlp.py +0 -0
  20. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/utils/label.py +0 -0
  21. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/utils/queue.py +0 -0
  22. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/utils/utils.py +0 -0
  23. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/SOURCES.txt +0 -0
  24. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/dependency_links.txt +0 -0
  25. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/requires.txt +0 -0
  26. {sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/top_level.txt +0 -0
  27. {sure_tools-3.6.12 → sure_tools-3.6.14}/setup.cfg +0 -0
{sure_tools-3.6.12 → sure_tools-3.6.14}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 3.6.12
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+ Version: 3.6.14
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE_nsf.py RENAMED
@@ -580,10 +580,7 @@ class SURENF(nn.Module):
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  X_batch = X_batch.to(self.get_device())
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  C_batch = cs[idx].to(self.get_device())
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- #_,ind = self._hard_assignments(X_batch)
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- #z_basal = cb_loc[ind.squeeze()]
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- ns = self._soft_assignments(X_batch)
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- z_basal = torch.matmul(ns, cb_loc)
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+ z_basal = self._get_cell_embedding(X_batch)
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  dzs = self.condition_effect([C_batch,z_basal])
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  A.append(tensor_to_numpy(dzs))
{sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE_vae.py RENAMED
@@ -593,10 +593,7 @@ class SUREVAE(nn.Module):
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  X_batch = X_batch.to(self.get_device())
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  C_batch = cs[idx].to(self.get_device())
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- #_,ind = self._hard_assignments(X_batch)
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- #z_basal = cb_loc[ind.squeeze()]
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- ns = self._soft_assignments(X_batch)
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- z_basal = torch.matmul(ns, cb_loc)
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+ z_basal = self._get_cell_embedding(X_batch)
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  dzs = self.condition_effect([C_batch,z_basal])
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  A.append(tensor_to_numpy(dzs))
{sure_tools-3.6.12 → sure_tools-3.6.14}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 3.6.12
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+ Version: 3.6.14
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-3.6.12 → sure_tools-3.6.14}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='3.6.12',
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+ version='3.6.14',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-3.6.12 → sure_tools-3.6.14}/LICENSE RENAMED
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{sure_tools-3.6.12 → sure_tools-3.6.14}/README.md RENAMED
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{sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SURE.py RENAMED
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{sure_tools-3.6.12 → sure_tools-3.6.14}/SURE/SUREMO.py RENAMED
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{sure_tools-3.6.12 → sure_tools-3.6.14}/setup.cfg RENAMED
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