SURE-tools 3.6.12__tar.gz → 3.6.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {sure_tools-3.6.12 → sure_tools-3.6.13}/PKG-INFO +1 -1
  2. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE_vae.py +3 -4
  3. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-3.6.12 → sure_tools-3.6.13}/setup.py +1 -1
  5. {sure_tools-3.6.12 → sure_tools-3.6.13}/LICENSE +0 -0
  6. {sure_tools-3.6.12 → sure_tools-3.6.13}/README.md +0 -0
  7. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE.py +0 -0
  8. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SUREMO.py +0 -0
  9. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE_nsf.py +0 -0
  10. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE_vanilla.py +0 -0
  11. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/__init__.py +0 -0
  12. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/atac/utils.py +0 -0
  14. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/dist/__init__.py +0 -0
  15. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/dist/negbinomial.py +0 -0
  16. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/graph/__init__.py +0 -0
  17. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/graph/graph_utils.py +0 -0
  18. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/utils/__init__.py +0 -0
  19. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/utils/custom_mlp.py +0 -0
  20. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/utils/label.py +0 -0
  21. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/utils/queue.py +0 -0
  22. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/utils/utils.py +0 -0
  23. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/SOURCES.txt +0 -0
  24. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/dependency_links.txt +0 -0
  25. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/requires.txt +0 -0
  26. {sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/top_level.txt +0 -0
  27. {sure_tools-3.6.12 → sure_tools-3.6.13}/setup.cfg +0 -0
{sure_tools-3.6.12 → sure_tools-3.6.13}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 3.6.12
3
+ Version: 3.6.13
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE_vae.py RENAMED
@@ -593,10 +593,9 @@ class SUREVAE(nn.Module):
593
593
  X_batch = X_batch.to(self.get_device())
594
594
  C_batch = cs[idx].to(self.get_device())
595
595
 
596
- #_,ind = self._hard_assignments(X_batch)
597
- #z_basal = cb_loc[ind.squeeze()]
598
- ns = self._soft_assignments(X_batch)
599
- z_basal = torch.matmul(ns, cb_loc)
596
+ #ns = self._soft_assignments(X_batch)
597
+ #z_basal = torch.matmul(ns, cb_loc)
598
+ z_basal = self._get_cell_embedding(X_batch)
600
599
  dzs = self.condition_effect([C_batch,z_basal])
601
600
 
602
601
  A.append(tensor_to_numpy(dzs))
{sure_tools-3.6.12 → sure_tools-3.6.13}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 3.6.12
3
+ Version: 3.6.13
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-3.6.12 → sure_tools-3.6.13}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='3.6.12',
8
+ version='3.6.13',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-3.6.12 → sure_tools-3.6.13}/LICENSE RENAMED
File without changes
{sure_tools-3.6.12 → sure_tools-3.6.13}/README.md RENAMED
File without changes
{sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SURE.py RENAMED
File without changes
{sure_tools-3.6.12 → sure_tools-3.6.13}/SURE/SUREMO.py RENAMED
File without changes
{sure_tools-3.6.12 → sure_tools-3.6.13}/setup.cfg RENAMED
File without changes