SURE-tools 2.4.2__tar.gz → 2.4.25__tar.gz

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  1. {sure_tools-2.4.2 → sure_tools-2.4.25}/PKG-INFO +1 -1
  2. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/DensityFlow.py +7 -0
  3. sure_tools-2.4.25/SURE/DensityFlow2.py +1422 -0
  4. sure_tools-2.4.25/SURE/EfficientTranscriptomeDecoder.py +552 -0
  5. sure_tools-2.4.25/SURE/PerturbationAwareDecoder.py +737 -0
  6. sure_tools-2.4.25/SURE/SimpleTranscriptomeDecoder.py +567 -0
  7. sure_tools-2.4.25/SURE/TranscriptomeDecoder.py +511 -0
  8. sure_tools-2.4.25/SURE/VirtualCellDecoder.py +658 -0
  9. sure_tools-2.4.25/SURE/__init__.py +28 -0
  10. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/PKG-INFO +1 -1
  11. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/SOURCES.txt +5 -0
  12. {sure_tools-2.4.2 → sure_tools-2.4.25}/setup.py +1 -1
  13. sure_tools-2.4.2/SURE/TranscriptomeDecoder.py +0 -527
  14. sure_tools-2.4.2/SURE/__init__.py +0 -16
  15. {sure_tools-2.4.2 → sure_tools-2.4.25}/LICENSE +0 -0
  16. {sure_tools-2.4.2 → sure_tools-2.4.25}/README.md +0 -0
  17. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/PerturbE.py +0 -0
  18. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/SURE.py +0 -0
  19. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/assembly/__init__.py +0 -0
  20. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/assembly/assembly.py +0 -0
  21. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/assembly/atlas.py +0 -0
  22. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/atac/__init__.py +0 -0
  23. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/atac/utils.py +0 -0
  24. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/codebook/__init__.py +0 -0
  25. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/codebook/codebook.py +0 -0
  26. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/flow/__init__.py +0 -0
  27. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/flow/flow_stats.py +0 -0
  28. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/flow/plot_quiver.py +0 -0
  29. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/perturb/__init__.py +0 -0
  30. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/perturb/perturb.py +0 -0
  31. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/utils/__init__.py +0 -0
  32. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/utils/custom_mlp.py +0 -0
  33. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/utils/queue.py +0 -0
  34. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/utils/utils.py +0 -0
  35. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/dependency_links.txt +0 -0
  36. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/entry_points.txt +0 -0
  37. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/requires.txt +0 -0
  38. {sure_tools-2.4.2 → sure_tools-2.4.25}/SURE_tools.egg-info/top_level.txt +0 -0
  39. {sure_tools-2.4.2 → sure_tools-2.4.25}/setup.cfg +0 -0
{sure_tools-2.4.2 → sure_tools-2.4.25}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.4.2
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+ Version: 2.4.25
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.4.2 → sure_tools-2.4.25}/SURE/DensityFlow.py RENAMED
@@ -109,6 +109,13 @@ class DensityFlow(nn.Module):
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  set_random_seed(seed)
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  self.setup_networks()
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+
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+ print(f"🧬 DensityFlow Initialized:")
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+ print(f" - Latent Dimension: {self.latent_dim}")
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+ print(f" - Gene Dimension: {self.input_size}")
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+ print(f" - Hidden Dimensions: {self.hidden_layers}")
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+ print(f" - Device: {self.get_device()}")
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+ print(f" - Parameters: {sum(p.numel() for p in self.parameters()):,}")
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  def setup_networks(self):
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  latent_dim = self.latent_dim