SURE-tools 2.2.0__tar.gz → 2.2.1__tar.gz

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Files changed (30) hide show
  1. {sure_tools-2.2.0 → sure_tools-2.2.1}/PKG-INFO +1 -1
  2. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/DensityFlow.py +1 -1
  3. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/flow/flow_stats.py +12 -0
  4. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/PKG-INFO +1 -1
  5. {sure_tools-2.2.0 → sure_tools-2.2.1}/setup.py +1 -1
  6. {sure_tools-2.2.0 → sure_tools-2.2.1}/LICENSE +0 -0
  7. {sure_tools-2.2.0 → sure_tools-2.2.1}/README.md +0 -0
  8. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/SURE.py +0 -0
  9. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/__init__.py +0 -0
  10. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/assembly/__init__.py +0 -0
  11. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/assembly/assembly.py +0 -0
  12. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/assembly/atlas.py +0 -0
  13. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/atac/__init__.py +0 -0
  14. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/atac/utils.py +0 -0
  15. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/codebook/__init__.py +0 -0
  16. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/codebook/codebook.py +0 -0
  17. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/flow/__init__.py +0 -0
  18. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.2.0 → sure_tools-2.2.1}/setup.cfg +0 -0
{sure_tools-2.2.0 → sure_tools-2.2.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.2.0
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+ Version: 2.2.1
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/DensityFlow.py RENAMED
@@ -970,7 +970,7 @@ class DensityFlow(nn.Module):
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  us = None,
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  ys = None,
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  zs = None,
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- num_epochs: int = 200,
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+ num_epochs: int = 500,
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  learning_rate: float = 0.0001,
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  batch_size: int = 256,
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  algo: Literal['adam','rmsprop','adamw'] = 'adam',
{sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/flow/flow_stats.py RENAMED
@@ -41,6 +41,18 @@ class VectorFieldEval:
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  divergence[np.isnan(divergence)] = 0
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  return divergence
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+
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+ def movement_stats(self,vectors):
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+ return calculate_movement_stats(vectors)
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+
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+ def direction_stats(self, vectors):
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+ return calculate_direction_stats(vectors)
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+
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+ def movement_energy(self, vectors, masses=None):
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+ return calculate_movement_energy(vectors, masses)
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+
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+ def movement_divergence(self, positions, vectors):
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+ return calculate_movement_divergence(positions, vectors)
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  def calculate_movement_stats(vectors):
{sure_tools-2.2.0 → sure_tools-2.2.1}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.2.0
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+ Version: 2.2.1
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.2.0 → sure_tools-2.2.1}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.2.0',
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+ version='2.2.1',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.2.0 → sure_tools-2.2.1}/LICENSE RENAMED
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{sure_tools-2.2.0 → sure_tools-2.2.1}/README.md RENAMED
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{sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/SURE.py RENAMED
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{sure_tools-2.2.0 → sure_tools-2.2.1}/SURE/__init__.py RENAMED
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{sure_tools-2.2.0 → sure_tools-2.2.1}/setup.cfg RENAMED
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