SURE-tools 2.1.67__tar.gz → 2.1.69__tar.gz

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  1. {sure_tools-2.1.67 → sure_tools-2.1.69}/PKG-INFO +1 -1
  2. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/PerturbFlow.py +2 -4
  3. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.67 → sure_tools-2.1.69}/setup.py +1 -1
  5. {sure_tools-2.1.67 → sure_tools-2.1.69}/LICENSE +0 -0
  6. {sure_tools-2.1.67 → sure_tools-2.1.69}/README.md +0 -0
  7. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.67 → sure_tools-2.1.69}/setup.cfg +0 -0
{sure_tools-2.1.67 → sure_tools-2.1.69}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.67
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+ Version: 2.1.69
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/PerturbFlow.py RENAMED
@@ -886,8 +886,8 @@ class PerturbFlow(nn.Module):
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  elif self.loss_func == 'poisson':
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  rate = concentrate.exp()
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  theta = dist.DirichletMultinomial(total_count=1, concentration=rate).mean
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- rate = theta * library_size
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- counts = dist.Poisson(rate=rate).to_event(1).mean
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+ counts = theta * library_size
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+ #counts = dist.Poisson(rate=rate).to_event(1).mean
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  elif self.loss_func == 'multinomial':
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  rate = concentrate.exp()
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  theta = dist.DirichletMultinomial(total_count=1, concentration=rate).mean
@@ -927,8 +927,6 @@ class PerturbFlow(nn.Module):
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  E = []
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  with tqdm(total=len(dataloader), desc='', unit='batch') as pbar:
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  for Z_batch, L_batch, _ in dataloader:
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- if self.loss_func != 'multinomial':
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- L_batch = None
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  concentrate = self._get_expression_response(Z_batch)
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  if use_sampler:
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  counts = self._count_sample(concentrate)
{sure_tools-2.1.67 → sure_tools-2.1.69}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.67
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+ Version: 2.1.69
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.67 → sure_tools-2.1.69}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.67',
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+ version='2.1.69',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.67 → sure_tools-2.1.69}/LICENSE RENAMED
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{sure_tools-2.1.67 → sure_tools-2.1.69}/README.md RENAMED
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{sure_tools-2.1.67 → sure_tools-2.1.69}/SURE/SURE.py RENAMED
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{sure_tools-2.1.67 → sure_tools-2.1.69}/setup.cfg RENAMED
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