SURE-tools 2.1.67__tar.gz → 2.1.68__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of SURE-tools might be problematic. Click here for more details.

Files changed (30) hide show
  1. {sure_tools-2.1.67 → sure_tools-2.1.68}/PKG-INFO +1 -1
  2. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/PerturbFlow.py +3 -3
  3. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.67 → sure_tools-2.1.68}/setup.py +1 -1
  5. {sure_tools-2.1.67 → sure_tools-2.1.68}/LICENSE +0 -0
  6. {sure_tools-2.1.67 → sure_tools-2.1.68}/README.md +0 -0
  7. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.67 → sure_tools-2.1.68}/setup.cfg +0 -0
{sure_tools-2.1.67 → sure_tools-2.1.68}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.67
3
+ Version: 2.1.68
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/PerturbFlow.py RENAMED
@@ -886,8 +886,8 @@ class PerturbFlow(nn.Module):
886
886
  elif self.loss_func == 'poisson':
887
887
  rate = concentrate.exp()
888
888
  theta = dist.DirichletMultinomial(total_count=1, concentration=rate).mean
889
- rate = theta * library_size
890
- counts = dist.Poisson(rate=rate).to_event(1).mean
889
+ counts = theta * library_size
890
+ #counts = dist.Poisson(rate=rate).to_event(1).mean
891
891
  elif self.loss_func == 'multinomial':
892
892
  rate = concentrate.exp()
893
893
  theta = dist.DirichletMultinomial(total_count=1, concentration=rate).mean
@@ -927,7 +927,7 @@ class PerturbFlow(nn.Module):
927
927
  E = []
928
928
  with tqdm(total=len(dataloader), desc='', unit='batch') as pbar:
929
929
  for Z_batch, L_batch, _ in dataloader:
930
- if self.loss_func != 'multinomial':
930
+ if self.loss_func not in ['multinomial','poisson']:
931
931
  L_batch = None
932
932
  concentrate = self._get_expression_response(Z_batch)
933
933
  if use_sampler:
{sure_tools-2.1.67 → sure_tools-2.1.68}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.67
3
+ Version: 2.1.68
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.67 → sure_tools-2.1.68}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='2.1.67',
8
+ version='2.1.68',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-2.1.67 → sure_tools-2.1.68}/LICENSE RENAMED
File without changes
{sure_tools-2.1.67 → sure_tools-2.1.68}/README.md RENAMED
File without changes
{sure_tools-2.1.67 → sure_tools-2.1.68}/SURE/SURE.py RENAMED
File without changes
{sure_tools-2.1.67 → sure_tools-2.1.68}/setup.cfg RENAMED
File without changes