SURE-tools 2.1.63__tar.gz → 2.1.65__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. {sure_tools-2.1.63 → sure_tools-2.1.65}/PKG-INFO +1 -1
  2. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/PerturbFlow.py +2 -2
  3. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.63 → sure_tools-2.1.65}/setup.py +1 -1
  5. {sure_tools-2.1.63 → sure_tools-2.1.65}/LICENSE +0 -0
  6. {sure_tools-2.1.63 → sure_tools-2.1.65}/README.md +0 -0
  7. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.63 → sure_tools-2.1.65}/setup.cfg +0 -0
{sure_tools-2.1.63 → sure_tools-2.1.65}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.63
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+ Version: 2.1.65
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/PerturbFlow.py RENAMED
@@ -911,13 +911,13 @@ class PerturbFlow(nn.Module):
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  zs = convert_to_tensor(zs, device=self.get_device())
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  if self.loss_func in ['multinomial','poisson']:
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- #assert library_sizes is not None, 'Library sizes are required for multinomial!'
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+ assert library_sizes is not None, 'Library sizes are required for multinomial!'
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  if type(library_sizes) == list:
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  library_sizes = np.array(library_sizes).view(-1,1)
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  elif len(library_sizes.shape)==1:
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  library_sizes = library_sizes.view(-1,1)
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- ls = convert_to_tensor(library_sizes, device=self.get_device)
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+ ls = convert_to_tensor(library_sizes, device=self.get_device())
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  else:
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  ls = zs
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{sure_tools-2.1.63 → sure_tools-2.1.65}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.63
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+ Version: 2.1.65
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.63 → sure_tools-2.1.65}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.63',
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+ version='2.1.65',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.63 → sure_tools-2.1.65}/LICENSE RENAMED
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{sure_tools-2.1.63 → sure_tools-2.1.65}/README.md RENAMED
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{sure_tools-2.1.63 → sure_tools-2.1.65}/SURE/SURE.py RENAMED
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{sure_tools-2.1.63 → sure_tools-2.1.65}/setup.cfg RENAMED
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