SURE-tools 2.1.60__tar.gz → 2.1.62__tar.gz

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  1. {sure_tools-2.1.60 → sure_tools-2.1.62}/PKG-INFO +1 -1
  2. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/PerturbFlow.py +3 -2
  3. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.60 → sure_tools-2.1.62}/setup.py +1 -1
  5. {sure_tools-2.1.60 → sure_tools-2.1.62}/LICENSE +0 -0
  6. {sure_tools-2.1.60 → sure_tools-2.1.62}/README.md +0 -0
  7. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.60 → sure_tools-2.1.62}/setup.cfg +0 -0
{sure_tools-2.1.60 → sure_tools-2.1.62}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.60
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+ Version: 2.1.62
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/PerturbFlow.py RENAMED
@@ -909,16 +909,17 @@ class PerturbFlow(nn.Module):
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  use_sampler: bool = False):
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  zs = convert_to_tensor(zs, device=self.get_device())
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- ls = zs
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  if self.loss_func in ['multinomial','poisson']:
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- assert library_sizes!=None, 'Library sizes are required for multinomial!'
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+ assert library_sizes is not None, 'Library sizes are required for multinomial!'
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  if type(library_sizes) == list:
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  library_sizes = np.array(library_sizes).view(-1,1)
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  elif len(library_sizes.shape)==1:
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  library_sizes = library_sizes.view(-1,1)
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  ls = convert_to_tensor(library_sizes, device=self.get_device)
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+ else:
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+ ls = zs
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  dataset = CustomDataset2(zs,ls)
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  dataloader = DataLoader(dataset, batch_size=batch_size, shuffle=False)
{sure_tools-2.1.60 → sure_tools-2.1.62}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.60
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+ Version: 2.1.62
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.60 → sure_tools-2.1.62}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.60',
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+ version='2.1.62',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.60 → sure_tools-2.1.62}/LICENSE RENAMED
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{sure_tools-2.1.60 → sure_tools-2.1.62}/README.md RENAMED
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{sure_tools-2.1.60 → sure_tools-2.1.62}/SURE/SURE.py RENAMED
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{sure_tools-2.1.60 → sure_tools-2.1.62}/setup.cfg RENAMED
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