SURE-tools 2.1.4__tar.gz → 2.4.0__tar.gz

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Files changed (35) hide show
  1. {sure_tools-2.1.4 → sure_tools-2.4.0}/PKG-INFO +2 -1
  2. sure_tools-2.4.0/SURE/DensityFlow.py +1388 -0
  3. sure_tools-2.1.4/SURE/PerturbFlow.py → sure_tools-2.4.0/SURE/PerturbE.py +208 -223
  4. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/SURE.py +70 -100
  5. sure_tools-2.4.0/SURE/TranscriptomeDecoder.py +712 -0
  6. sure_tools-2.4.0/SURE/__init__.py +16 -0
  7. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/flow/__init__.py +1 -1
  8. sure_tools-2.4.0/SURE/flow/flow_stats.py +324 -0
  9. sure_tools-2.4.0/SURE/flow/plot_quiver.py +199 -0
  10. sure_tools-2.4.0/SURE/perturb/__init__.py +1 -0
  11. sure_tools-2.4.0/SURE/perturb/perturb.py +169 -0
  12. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/utils/__init__.py +1 -1
  13. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/utils/custom_mlp.py +113 -4
  14. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/PKG-INFO +2 -1
  15. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/SOURCES.txt +5 -1
  16. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/requires.txt +1 -0
  17. {sure_tools-2.1.4 → sure_tools-2.4.0}/setup.py +2 -2
  18. sure_tools-2.1.4/SURE/__init__.py +0 -11
  19. sure_tools-2.1.4/SURE/flow/flow_stats.py +0 -78
  20. sure_tools-2.1.4/SURE/flow/plot_quiver.py +0 -52
  21. {sure_tools-2.1.4 → sure_tools-2.4.0}/LICENSE +0 -0
  22. {sure_tools-2.1.4 → sure_tools-2.4.0}/README.md +0 -0
  23. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/assembly/__init__.py +0 -0
  24. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/assembly/assembly.py +0 -0
  25. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/assembly/atlas.py +0 -0
  26. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/atac/__init__.py +0 -0
  27. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/atac/utils.py +0 -0
  28. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/codebook/__init__.py +0 -0
  29. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/codebook/codebook.py +0 -0
  30. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/utils/queue.py +0 -0
  31. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE/utils/utils.py +0 -0
  32. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/dependency_links.txt +0 -0
  33. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/entry_points.txt +0 -0
  34. {sure_tools-2.1.4 → sure_tools-2.4.0}/SURE_tools.egg-info/top_level.txt +0 -0
  35. {sure_tools-2.1.4 → sure_tools-2.4.0}/setup.cfg +0 -0
{sure_tools-2.1.4 → sure_tools-2.4.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.4
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+ Version: 2.4.0
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -20,6 +20,7 @@ Requires-Dist: numpy
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  Requires-Dist: scikit-learn
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  Requires-Dist: pandas
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  Requires-Dist: pyro-ppl
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+ Requires-Dist: jax[cuda12]
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  Requires-Dist: leidenalg
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  Requires-Dist: python-igraph
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  Requires-Dist: networkx