SURE-tools 2.1.48__tar.gz → 2.1.50__tar.gz

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  1. {sure_tools-2.1.48 → sure_tools-2.1.50}/PKG-INFO +2 -1
  2. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/PerturbFlow.py +1 -1
  3. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/PKG-INFO +2 -1
  4. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/requires.txt +1 -0
  5. {sure_tools-2.1.48 → sure_tools-2.1.50}/setup.py +2 -2
  6. {sure_tools-2.1.48 → sure_tools-2.1.50}/LICENSE +0 -0
  7. {sure_tools-2.1.48 → sure_tools-2.1.50}/README.md +0 -0
  8. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/SURE.py +0 -0
  9. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/__init__.py +0 -0
  10. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/assembly/__init__.py +0 -0
  11. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/assembly/assembly.py +0 -0
  12. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/assembly/atlas.py +0 -0
  13. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/atac/__init__.py +0 -0
  14. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/atac/utils.py +0 -0
  15. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/codebook/__init__.py +0 -0
  16. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/codebook/codebook.py +0 -0
  17. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/flow/__init__.py +0 -0
  18. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/flow/flow_stats.py +0 -0
  19. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/flow/plot_quiver.py +0 -0
  20. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/perturb/__init__.py +0 -0
  21. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/perturb/perturb.py +0 -0
  22. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/utils/__init__.py +0 -0
  23. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/utils/custom_mlp.py +0 -0
  24. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/utils/queue.py +0 -0
  25. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/utils/utils.py +0 -0
  26. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/SOURCES.txt +0 -0
  27. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/dependency_links.txt +0 -0
  28. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/entry_points.txt +0 -0
  29. {sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.48 → sure_tools-2.1.50}/setup.cfg +0 -0
{sure_tools-2.1.48 → sure_tools-2.1.50}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.48
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+ Version: 2.1.50
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -20,6 +20,7 @@ Requires-Dist: numpy
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  Requires-Dist: scikit-learn
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  Requires-Dist: pandas
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  Requires-Dist: pyro-ppl
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+ Requires-Dist: jax[cuda12]
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  Requires-Dist: leidenalg
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  Requires-Dist: python-igraph
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  Requires-Dist: networkx
{sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/PerturbFlow.py RENAMED
@@ -897,7 +897,7 @@ class PerturbFlow(nn.Module):
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  E = []
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  with tqdm(total=len(dataloader), desc='', unit='batch') as pbar:
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  for Z_batch, _ in dataloader:
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- concentrate = self._expression(Z_batch)
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+ concentrate = self._get_expression_response(Z_batch)
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  if use_sampler:
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  counts = self._count_sample(concentrate)
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  else:
{sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.48
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+ Version: 2.1.50
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -20,6 +20,7 @@ Requires-Dist: numpy
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  Requires-Dist: scikit-learn
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  Requires-Dist: pandas
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  Requires-Dist: pyro-ppl
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+ Requires-Dist: jax[cuda12]
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  Requires-Dist: leidenalg
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  Requires-Dist: python-igraph
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  Requires-Dist: networkx
{sure_tools-2.1.48 → sure_tools-2.1.50}/SURE_tools.egg-info/requires.txt RENAMED
@@ -7,6 +7,7 @@ numpy
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  scikit-learn
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  pandas
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  pyro-ppl
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+ jax[cuda12]
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  leidenalg
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  python-igraph
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  networkx
{sure_tools-2.1.48 → sure_tools-2.1.50}/setup.py RENAMED
@@ -5,14 +5,14 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.48',
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+ version='2.1.50',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
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  author='Feng Zeng',
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  author_email='zengfeng@xmu.edu.cn',
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  packages=find_packages(),
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- install_requires=['dill==0.3.8','scanpy','pytorch-ignite','datatable','scipy','numpy','scikit-learn','pandas','pyro-ppl',
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+ install_requires=['dill==0.3.8','scanpy','pytorch-ignite','datatable','scipy','numpy','scikit-learn','pandas','pyro-ppl', "jax[cuda12]",
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  'leidenalg','python-igraph','networkx','matplotlib','seaborn','fa2-modified'],
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  classifiers=[
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  'Programming Language :: Python :: 3',
{sure_tools-2.1.48 → sure_tools-2.1.50}/LICENSE RENAMED
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{sure_tools-2.1.48 → sure_tools-2.1.50}/README.md RENAMED
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{sure_tools-2.1.48 → sure_tools-2.1.50}/SURE/SURE.py RENAMED
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{sure_tools-2.1.48 → sure_tools-2.1.50}/setup.cfg RENAMED
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