SURE-tools 2.1.45__tar.gz → 2.1.47__tar.gz

{sure_tools-2.1.45 → sure_tools-2.1.47}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SURE-tools
-Version: 2.1.45
+Version: 2.1.47
 Summary: Succinct Representation of Single Cells
 Home-page: https://github.com/ZengFLab/SURE
 Author: Feng Zeng

{sure_tools-2.1.45 → sure_tools-2.1.47}/SURE/flow/flow_stats.py

@@ -1,4 +1,5 @@
 import numpy as np
+from scipy.interpolate import griddata
 from scipy.spatial.distance import pdist, squareform
 from sklearn.decomposition import PCA
 from scipy.stats import pearsonr
@@ -16,6 +17,30 @@ class VectorFieldEval:
         
     def momentum_flow_metric(self, vectors, masses=None):
         return momentum_flow_metric(vectors=vectors, masses=masses)
+    
+    def divergence(self, points, vectors, grid_resolution=30):
+        # 提取坐标和向量分量
+        x_coords = points[:, 0]
+        y_coords = points[:, 1]
+        u_components = vectors[:, 0]  # x方向分量
+        v_components = vectors[:, 1]  # y方向分量
+    
+        # 创建规则网格
+        x_grid = np.linspace(x_coords.min(), x_coords.max(), grid_resolution)
+        y_grid = np.linspace(y_coords.min(), y_coords.max(), grid_resolution)
+        X, Y = np.meshgrid(x_grid, y_grid)
+    
+        # 插值到网格
+        U_grid = griddata((x_coords, y_coords), u_components, (X, Y), method='linear')
+        V_grid = griddata((x_coords, y_coords), v_components, (X, Y), method='linear')
+    
+        # 计算散度
+        dU_dx = np.gradient(U_grid, x_grid, axis=1)
+        dV_dy = np.gradient(V_grid, y_grid, axis=0)
+        divergence = dU_dx + dV_dy
+        divergence[np.isnan(divergence)] = 0
+        
+        return divergence
 
         
 def calculate_movement_stats(vectors):

{sure_tools-2.1.45 → sure_tools-2.1.47}/SURE/perturb/perturb.py

@@ -9,7 +9,7 @@ class LabelMatrix:
     def __init__(self):
         self.labels_ = None
     
-    def fit_transform(self, labels, control_label=None, sep_pattern=r'[;_\-\s]', speedup: Literal['none','vectorize','parallel']='none'):
+    def fit_transform(self, labels, control_label=None, sep_pattern=r'[,;_\s]', speedup: Literal['none','vectorize','parallel']='none'):
         if speedup=='none':
             mat, self.labels_ = label_to_matrix(labels=labels, sep_pattern=sep_pattern)
         elif speedup=='vectorize':

{sure_tools-2.1.45 → sure_tools-2.1.47}/SURE_tools.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SURE-tools
-Version: 2.1.45
+Version: 2.1.47
 Summary: Succinct Representation of Single Cells
 Home-page: https://github.com/ZengFLab/SURE
 Author: Feng Zeng

{sure_tools-2.1.45 → sure_tools-2.1.47}/setup.py

@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
 
 setup(
     name='SURE-tools',
-    version='2.1.45',
+    version='2.1.47',
     description='Succinct Representation of Single Cells',
     long_description=long_description,
     long_description_content_type="text/markdown",