SURE-tools 2.1.43__tar.gz → 2.1.45__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of SURE-tools might be problematic. Click here for more details.

Files changed (30) hide show
  1. {sure_tools-2.1.43 → sure_tools-2.1.45}/PKG-INFO +1 -1
  2. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/PerturbFlow.py +4 -2
  3. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.43 → sure_tools-2.1.45}/setup.py +1 -1
  5. {sure_tools-2.1.43 → sure_tools-2.1.45}/LICENSE +0 -0
  6. {sure_tools-2.1.43 → sure_tools-2.1.45}/README.md +0 -0
  7. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.43 → sure_tools-2.1.45}/setup.cfg +0 -0
{sure_tools-2.1.43 → sure_tools-2.1.45}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.43
3
+ Version: 2.1.45
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/PerturbFlow.py RENAMED
@@ -731,7 +731,8 @@ class PerturbFlow(nn.Module):
731
731
  if self.supervised_mode:
732
732
  alpha = self.encoder_n(xs)
733
733
  else:
734
- zns,_ = self.encoder_zn(xs)
734
+ #zns,_ = self.encoder_zn(xs)
735
+ zns = self._get_basal_embedding(xs)
735
736
  alpha = self.encoder_n(zns)
736
737
  return alpha
737
738
 
@@ -801,7 +802,8 @@ class PerturbFlow(nn.Module):
801
802
  return A
802
803
 
803
804
  def _cell_response(self, xs, factor_idx, perturb):
804
- zns,_ = self.encoder_zn(xs)
805
+ #zns,_ = self.encoder_zn(xs)
806
+ zns = self._get_basal_embedding(xs)
805
807
  if perturb.ndim==2:
806
808
  ms = self.cell_factor_effect[factor_idx]([zns, perturb])
807
809
  else:
{sure_tools-2.1.43 → sure_tools-2.1.45}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.43
3
+ Version: 2.1.45
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.43 → sure_tools-2.1.45}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='2.1.43',
8
+ version='2.1.45',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-2.1.43 → sure_tools-2.1.45}/LICENSE RENAMED
File without changes
{sure_tools-2.1.43 → sure_tools-2.1.45}/README.md RENAMED
File without changes
{sure_tools-2.1.43 → sure_tools-2.1.45}/SURE/SURE.py RENAMED
File without changes
{sure_tools-2.1.43 → sure_tools-2.1.45}/setup.cfg RENAMED
File without changes