SURE-tools 2.1.36__tar.gz → 2.1.37__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. {sure_tools-2.1.36 → sure_tools-2.1.37}/PKG-INFO +1 -1
  2. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/perturb/perturb.py +6 -4
  3. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.36 → sure_tools-2.1.37}/setup.py +1 -1
  5. {sure_tools-2.1.36 → sure_tools-2.1.37}/LICENSE +0 -0
  6. {sure_tools-2.1.36 → sure_tools-2.1.37}/README.md +0 -0
  7. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/PerturbFlow.py +0 -0
  8. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/SURE.py +0 -0
  9. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/__init__.py +0 -0
  10. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/assembly/__init__.py +0 -0
  11. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/assembly/assembly.py +0 -0
  12. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/assembly/atlas.py +0 -0
  13. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/atac/__init__.py +0 -0
  14. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/atac/utils.py +0 -0
  15. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/codebook/__init__.py +0 -0
  16. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/codebook/codebook.py +0 -0
  17. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/flow/__init__.py +0 -0
  18. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/flow/flow_stats.py +0 -0
  19. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/flow/plot_quiver.py +0 -0
  20. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/perturb/__init__.py +0 -0
  21. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.36 → sure_tools-2.1.37}/setup.cfg +0 -0
{sure_tools-2.1.36 → sure_tools-2.1.37}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.36
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+ Version: 2.1.37
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/perturb/perturb.py RENAMED
@@ -8,7 +8,7 @@ class LabelMatrix:
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  def __init__(self):
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  self.labels_ = None
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- def fit_transform(self, labels, control_label, sep_pattern=r'[;_\-\s]', speedup: Literal['none','vectorize','parallel']='none'):
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+ def fit_transform(self, labels, control_label=None, sep_pattern=r'[;_\-\s]', speedup: Literal['none','vectorize','parallel']='none'):
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  if speedup=='none':
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  mat, self.labels_ = label_to_matrix(labels=labels, sep_pattern=sep_pattern)
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  elif speedup=='vectorize':
@@ -18,9 +18,11 @@ class LabelMatrix:
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  self.labels_ = np.array(self.labels_)
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- idx = np.where(self.labels_==control_label)[0]
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- mat = np.delete(mat, idx, axis=1)
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- self.labels_ = np.delete(self.labels_, idx)
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+ if control_label is not None:
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+ idx = np.where(self.labels_==control_label)[0]
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+ mat = np.delete(mat, idx, axis=1)
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+ self.labels_ = np.delete(self.labels_, idx)
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+
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  return mat
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  def inverse_transform(self, matrix):
{sure_tools-2.1.36 → sure_tools-2.1.37}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.36
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+ Version: 2.1.37
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.36 → sure_tools-2.1.37}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.36',
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+ version='2.1.37',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.36 → sure_tools-2.1.37}/LICENSE RENAMED
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{sure_tools-2.1.36 → sure_tools-2.1.37}/README.md RENAMED
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{sure_tools-2.1.36 → sure_tools-2.1.37}/SURE/SURE.py RENAMED
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{sure_tools-2.1.36 → sure_tools-2.1.37}/setup.cfg RENAMED
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