SURE-tools 2.1.33__tar.gz → 2.1.34__tar.gz

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Files changed (30) hide show
  1. {sure_tools-2.1.33 → sure_tools-2.1.34}/PKG-INFO +1 -1
  2. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/flow/flow_stats.py +5 -16
  3. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.33 → sure_tools-2.1.34}/setup.py +1 -1
  5. {sure_tools-2.1.33 → sure_tools-2.1.34}/LICENSE +0 -0
  6. {sure_tools-2.1.33 → sure_tools-2.1.34}/README.md +0 -0
  7. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/PerturbFlow.py +0 -0
  8. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/SURE.py +0 -0
  9. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/__init__.py +0 -0
  10. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/assembly/__init__.py +0 -0
  11. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/assembly/assembly.py +0 -0
  12. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/assembly/atlas.py +0 -0
  13. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/atac/__init__.py +0 -0
  14. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/atac/utils.py +0 -0
  15. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/codebook/__init__.py +0 -0
  16. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/codebook/codebook.py +0 -0
  17. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/flow/__init__.py +0 -0
  18. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/perturb/__init__.py +0 -0
  20. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/perturb/perturb.py +0 -0
  21. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/utils/__init__.py +0 -0
  22. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.33 → sure_tools-2.1.34}/setup.cfg +0 -0
{sure_tools-2.1.33 → sure_tools-2.1.34}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.33
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+ Version: 2.1.34
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/flow/flow_stats.py RENAMED
@@ -8,26 +8,15 @@ class VectorFieldEval:
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  def __init__(self):
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  pass
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- def directional_alignment(self, vectors, weighted=False):
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- if weighted:
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- return weighted_alignment(vectors=vectors)
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- else:
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- return directional_alignment(vectors=vectors)
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+ def directional_alignment(self, vectors):
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+ return weighted_alignment(vectors=vectors)
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- def flow_coherence(self, vectors, pca=False):
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- if pca:
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- return pca_based_coherence(vectors=vectors)
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- else:
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- return flow_coherence_index(vectors=vectors)
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+ def flow_coherence(self, vectors):
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+ return pca_based_coherence(vectors=vectors)
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  def momentum_flow_metric(self, vectors, masses=None):
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  return momentum_flow_metric(vectors=vectors, masses=masses)
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-
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- def multi_scale_coherence(self, vectors, positoins, scale_factors=[1.0, 0.5, 0.1]):
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- return multi_scale_coherence(vectors=vectors, positions=positoins, scale_factors=scale_factors)
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-
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- def vector_field_coherence_score(self, vectors, positions=None, weights=None):
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- return vector_field_coherence_score(vectors=vectors, positions=positions, weights=weights)
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+
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  def calculate_movement_stats(vectors):
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  """
{sure_tools-2.1.33 → sure_tools-2.1.34}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.33
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+ Version: 2.1.34
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.33 → sure_tools-2.1.34}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.33',
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+ version='2.1.34',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.33 → sure_tools-2.1.34}/LICENSE RENAMED
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{sure_tools-2.1.33 → sure_tools-2.1.34}/README.md RENAMED
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{sure_tools-2.1.33 → sure_tools-2.1.34}/SURE/SURE.py RENAMED
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{sure_tools-2.1.33 → sure_tools-2.1.34}/setup.cfg RENAMED
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