SURE-tools 2.1.32__tar.gz → 2.1.34__tar.gz

{sure_tools-2.1.32 → sure_tools-2.1.34}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SURE-tools
-Version: 2.1.32
+Version: 2.1.34
 Summary: Succinct Representation of Single Cells
 Home-page: https://github.com/ZengFLab/SURE
 Author: Feng Zeng

{sure_tools-2.1.32 → sure_tools-2.1.34}/SURE/flow/flow_stats.py

@@ -8,26 +8,15 @@ class VectorFieldEval:
     def __init__(self):
         pass 
     
-    def directional_alignment(self, vectors, weighted=False):
-        if weighted:
-            return weighted_alignment(vectors=vectors)
-        else:
-            return directional_alignment(vectors=vectors)
+    def directional_alignment(self, vectors):
+        return weighted_alignment(vectors=vectors)
         
-    def flow_coherence(self, vectors, pca=False):
-        if pca:
-            return pca_based_coherence(vectors=vectors)
-        else:
-            return flow_coherence_index(vectors=vectors)
+    def flow_coherence(self, vectors):
+        return pca_based_coherence(vectors=vectors)
         
     def momentum_flow_metric(self, vectors, masses=None):
         return momentum_flow_metric(vectors=vectors, masses=masses)
-            
-    def multi_scale_coherence(self, vectors, positoins, scale_factors=[1.0, 0.5, 0.1]):
-        return multi_scale_coherence(vectors=vectors, positions=positoins, scale_factors=scale_factors)
-    
-    def vector_field_coherence_score(self, vectors, positions=None, weights=None):
-        return vector_field_coherence_score(vectors=vectors, positions=positions, weights=weights)
+
         
 def calculate_movement_stats(vectors):
     """

{sure_tools-2.1.32 → sure_tools-2.1.34}/SURE/flow/plot_quiver.py

@@ -7,7 +7,7 @@ from matplotlib.colors import ListedColormap
 
 def plot_quiver(z_points, delta_z, method='pca', figsize=(6,4), dpi=200, 
                 subsample=None, color_by=None, colormap='viridis', 
-                arrow_scale=1.0, arrow_width=0.005, alpha=0.8):
+                arrow_scale=1.0, arrow_width=0.002, alpha=0.8):
     """
     优化后的quiver可视化函数
     

{sure_tools-2.1.32 → sure_tools-2.1.34}/SURE_tools.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: SURE-tools
-Version: 2.1.32
+Version: 2.1.34
 Summary: Succinct Representation of Single Cells
 Home-page: https://github.com/ZengFLab/SURE
 Author: Feng Zeng

{sure_tools-2.1.32 → sure_tools-2.1.34}/setup.py

@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
 
 setup(
     name='SURE-tools',
-    version='2.1.32',
+    version='2.1.34',
     description='Succinct Representation of Single Cells',
     long_description=long_description,
     long_description_content_type="text/markdown",