SURE-tools 2.1.2__tar.gz → 2.1.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of SURE-tools might be problematic. Click here for more details.

Files changed (28) hide show
  1. {sure_tools-2.1.2 → sure_tools-2.1.4}/PKG-INFO +1 -1
  2. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/PerturbFlow.py +3 -3
  3. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/PKG-INFO +1 -1
  4. {sure_tools-2.1.2 → sure_tools-2.1.4}/setup.py +1 -1
  5. {sure_tools-2.1.2 → sure_tools-2.1.4}/LICENSE +0 -0
  6. {sure_tools-2.1.2 → sure_tools-2.1.4}/README.md +0 -0
  7. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/SURE.py +0 -0
  8. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/__init__.py +0 -0
  9. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/assembly/__init__.py +0 -0
  10. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/assembly/assembly.py +0 -0
  11. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/assembly/atlas.py +0 -0
  12. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/atac/__init__.py +0 -0
  13. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/atac/utils.py +0 -0
  14. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/codebook/__init__.py +0 -0
  15. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/codebook/codebook.py +0 -0
  16. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/flow/__init__.py +0 -0
  17. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/flow/flow_stats.py +0 -0
  18. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/flow/plot_quiver.py +0 -0
  19. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/utils/__init__.py +0 -0
  20. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/utils/custom_mlp.py +0 -0
  21. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/utils/queue.py +0 -0
  22. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/utils/utils.py +0 -0
  23. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/SOURCES.txt +0 -0
  24. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/dependency_links.txt +0 -0
  25. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/entry_points.txt +0 -0
  26. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/requires.txt +0 -0
  27. {sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/top_level.txt +0 -0
  28. {sure_tools-2.1.2 → sure_tools-2.1.4}/setup.cfg +0 -0
{sure_tools-2.1.2 → sure_tools-2.1.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.2
3
+ Version: 2.1.4
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/PerturbFlow.py RENAMED
@@ -702,11 +702,11 @@ class PerturbFlow(nn.Module):
702
702
  cb = tensor_to_numpy(cb)
703
703
  return cb
704
704
 
705
- def _get_cell_embedding(self, xs):
705
+ def _get_basis_embedding(self, xs):
706
706
  zns, _ = self.encoder_zn(xs)
707
707
  return zns
708
708
 
709
- def get_cell_embedding(self,
709
+ def get_basis_embedding(self,
710
710
  xs,
711
711
  batch_size: int = 1024):
712
712
  """
@@ -868,7 +868,7 @@ class PerturbFlow(nn.Module):
868
868
  R = []
869
869
  with tqdm(total=len(dataloader), desc='', unit='batch') as pbar:
870
870
  for delta_Z_batch, _ in dataloader:
871
- r = self._cell_move(delta_Z_batch)
871
+ r = self._get_expression_response(delta_Z_batch)
872
872
  R.append(tensor_to_numpy(r))
873
873
  pbar.update(1)
874
874
 
{sure_tools-2.1.2 → sure_tools-2.1.4}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 2.1.2
3
+ Version: 2.1.4
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
{sure_tools-2.1.2 → sure_tools-2.1.4}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='2.1.2',
8
+ version='2.1.4',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-2.1.2 → sure_tools-2.1.4}/LICENSE RENAMED
File without changes
{sure_tools-2.1.2 → sure_tools-2.1.4}/README.md RENAMED
File without changes
{sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/SURE.py RENAMED
File without changes
{sure_tools-2.1.2 → sure_tools-2.1.4}/SURE/__init__.py RENAMED
File without changes
{sure_tools-2.1.2 → sure_tools-2.1.4}/setup.cfg RENAMED
File without changes