SURE-tools 2.1.26__tar.gz → 2.1.28__tar.gz

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Files changed (30) hide show
  1. {sure_tools-2.1.26 → sure_tools-2.1.28}/PKG-INFO +1 -1
  2. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/PerturbFlow.py +1 -1
  3. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/utils/__init__.py +1 -1
  4. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/PKG-INFO +1 -1
  5. {sure_tools-2.1.26 → sure_tools-2.1.28}/setup.py +1 -1
  6. {sure_tools-2.1.26 → sure_tools-2.1.28}/LICENSE +0 -0
  7. {sure_tools-2.1.26 → sure_tools-2.1.28}/README.md +0 -0
  8. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/SURE.py +0 -0
  9. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/__init__.py +0 -0
  10. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/assembly/__init__.py +0 -0
  11. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/assembly/assembly.py +0 -0
  12. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/assembly/atlas.py +0 -0
  13. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/atac/__init__.py +0 -0
  14. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/atac/utils.py +0 -0
  15. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/codebook/__init__.py +0 -0
  16. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/codebook/codebook.py +0 -0
  17. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/flow/__init__.py +0 -0
  18. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/flow/flow_stats.py +0 -0
  19. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/flow/plot_quiver.py +0 -0
  20. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/perturb/__init__.py +0 -0
  21. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/perturb/perturb.py +0 -0
  22. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/utils/custom_mlp.py +0 -0
  23. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/utils/queue.py +0 -0
  24. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/utils/utils.py +0 -0
  25. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/SOURCES.txt +0 -0
  26. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/dependency_links.txt +0 -0
  27. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/entry_points.txt +0 -0
  28. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/requires.txt +0 -0
  29. {sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/top_level.txt +0 -0
  30. {sure_tools-2.1.26 → sure_tools-2.1.28}/setup.cfg +0 -0
{sure_tools-2.1.26 → sure_tools-2.1.28}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.26
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+ Version: 2.1.28
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/PerturbFlow.py RENAMED
@@ -196,7 +196,7 @@ class PerturbFlow(nn.Module):
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  if self.cell_factor_size>0:
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  self.cell_factor_effect = nn.ModuleList()
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  for i in np.arange(self.cell_factor_size):
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- self.cell_factor_effect.append(MLP(
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+ self.cell_factor_effect.append(ZeroBiasMLP(
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  [self.latent_dim+1] + self.decoder_hidden_layers + [self.latent_dim],
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  activation=activate_fct,
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  output_activation=None,
{sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/utils/__init__.py RENAMED
@@ -7,7 +7,7 @@ from .utils import find_partitions_greedy
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  from .queue import PriorityQueue
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- from .custom_mlp import MLP, Exp
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+ from .custom_mlp import MLP, Exp, ZeroBiasMLP
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  # Importing modules
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  #from . import utils
{sure_tools-2.1.26 → sure_tools-2.1.28}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.26
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+ Version: 2.1.28
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.26 → sure_tools-2.1.28}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.1.26',
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+ version='2.1.28',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
{sure_tools-2.1.26 → sure_tools-2.1.28}/LICENSE RENAMED
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{sure_tools-2.1.26 → sure_tools-2.1.28}/README.md RENAMED
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{sure_tools-2.1.26 → sure_tools-2.1.28}/SURE/SURE.py RENAMED
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{sure_tools-2.1.26 → sure_tools-2.1.28}/setup.cfg RENAMED
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