SURE-tools 2.0.3__tar.gz → 2.0.5__tar.gz

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Files changed (27) hide show
  1. {sure_tools-2.0.3 → sure_tools-2.0.5}/PKG-INFO +1 -1
  2. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/SURE.py +1 -1
  3. sure_tools-2.0.5/SURE/flow/__init__.py +1 -0
  4. sure_tools-2.0.3/SURE/flow/quiver.py → sure_tools-2.0.5/SURE/flow/plot_quiver.py +1 -1
  5. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/PKG-INFO +1 -1
  6. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/SOURCES.txt +1 -1
  7. {sure_tools-2.0.3 → sure_tools-2.0.5}/setup.py +1 -1
  8. sure_tools-2.0.3/SURE/flow/__init__.py +0 -1
  9. {sure_tools-2.0.3 → sure_tools-2.0.5}/LICENSE +0 -0
  10. {sure_tools-2.0.3 → sure_tools-2.0.5}/README.md +0 -0
  11. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/__init__.py +0 -0
  12. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/assembly/__init__.py +0 -0
  13. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/assembly/assembly.py +0 -0
  14. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/assembly/atlas.py +0 -0
  15. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/atac/__init__.py +0 -0
  16. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/atac/utils.py +0 -0
  17. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/codebook/__init__.py +0 -0
  18. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/codebook/codebook.py +0 -0
  19. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/utils/__init__.py +0 -0
  20. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/utils/custom_mlp.py +0 -0
  21. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/utils/queue.py +0 -0
  22. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/utils/utils.py +0 -0
  23. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/dependency_links.txt +0 -0
  24. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/entry_points.txt +0 -0
  25. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/requires.txt +0 -0
  26. {sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/top_level.txt +0 -0
  27. {sure_tools-2.0.3 → sure_tools-2.0.5}/setup.cfg +0 -0
{sure_tools-2.0.3 → sure_tools-2.0.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.0.3
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+ Version: 2.0.5
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/SURE.py RENAMED
@@ -237,7 +237,7 @@ class SURE(nn.Module):
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  self.cell_factor_effect = nn.ModuleList()
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  for i in np.arange(self.cell_factor_size):
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  self.cell_factor_effect.append(MLP(
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- [self.z_dim+1] + hidden_sizes + [self.z_dim],
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+ [self.latent_dim+1] + hidden_sizes + [self.latent_dim],
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  activation=activate_fct,
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  output_activation=None,
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  post_layer_fct=post_layer_fct,
sure_tools-2.0.5/SURE/flow/__init__.py ADDED
@@ -0,0 +1 @@
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+ from .plot_quiver import plot_quiver
sure_tools-2.0.3/SURE/flow/quiver.py → sure_tools-2.0.5/SURE/flow/plot_quiver.py RENAMED
@@ -3,7 +3,7 @@ import matplotlib.pyplot as plt
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  from sklearn.decomposition import PCA
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  import scanpy as sc
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- def plot_quiver_high_dim(z_points, delta_z, method='umap', figsize=(6,4), dpi=200):
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+ def plot_quiver(z_points, delta_z, method='umap', figsize=(6,4), dpi=200):
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  """
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  从高维潜在空间选择2个维度进行quiver可视化
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  """
{sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.0.3
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+ Version: 2.0.5
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.0.3 → sure_tools-2.0.5}/SURE_tools.egg-info/SOURCES.txt RENAMED
@@ -11,7 +11,7 @@ SURE/atac/utils.py
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  SURE/codebook/__init__.py
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  SURE/codebook/codebook.py
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  SURE/flow/__init__.py
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- SURE/flow/quiver.py
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+ SURE/flow/plot_quiver.py
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  SURE/utils/__init__.py
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  SURE/utils/custom_mlp.py
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  SURE/utils/queue.py
{sure_tools-2.0.3 → sure_tools-2.0.5}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name='SURE-tools',
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- version='2.0.3',
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+ version='2.0.5',
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  description='Succinct Representation of Single Cells',
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  long_description=long_description,
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  long_description_content_type="text/markdown",
sure_tools-2.0.3/SURE/flow/__init__.py DELETED
@@ -1 +0,0 @@
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- from .quiver import plot_quiver
{sure_tools-2.0.3 → sure_tools-2.0.5}/LICENSE RENAMED
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{sure_tools-2.0.3 → sure_tools-2.0.5}/README.md RENAMED
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{sure_tools-2.0.3 → sure_tools-2.0.5}/SURE/__init__.py RENAMED
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{sure_tools-2.0.3 → sure_tools-2.0.5}/setup.cfg RENAMED
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