SURE-tools 1.0.1__tar.gz → 1.0.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of SURE-tools might be problematic. Click here for more details.

Files changed (22) hide show
  1. {sure_tools-1.0.1 → sure_tools-1.0.3}/PKG-INFO +12 -2
  2. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/SURE.py +1 -1
  3. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/PKG-INFO +12 -2
  4. {sure_tools-1.0.1 → sure_tools-1.0.3}/setup.py +1 -1
  5. {sure_tools-1.0.1 → sure_tools-1.0.3}/LICENSE +0 -0
  6. {sure_tools-1.0.1 → sure_tools-1.0.3}/README.md +0 -0
  7. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/__init__.py +0 -0
  8. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/assembly/__init__.py +0 -0
  9. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/assembly/assembly.py +0 -0
  10. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/assembly/atlas.py +0 -0
  11. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/codebook/__init__.py +0 -0
  12. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/codebook/codebook.py +0 -0
  13. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/utils/__init__.py +0 -0
  14. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/utils/custom_mlp.py +0 -0
  15. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/utils/queue.py +0 -0
  16. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/utils/utils.py +0 -0
  17. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/SOURCES.txt +0 -0
  18. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/dependency_links.txt +0 -0
  19. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/entry_points.txt +0 -0
  20. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/requires.txt +0 -0
  21. {sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/top_level.txt +0 -0
  22. {sure_tools-1.0.1 → sure_tools-1.0.3}/setup.cfg +0 -0
{sure_tools-1.0.1 → sure_tools-1.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 1.0.1
3
+ Version: 1.0.3
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
@@ -26,6 +26,16 @@ Requires-Dist: networkx
26
26
  Requires-Dist: matplotlib
27
27
  Requires-Dist: seaborn
28
28
  Requires-Dist: fa2-modified
29
+ Dynamic: author
30
+ Dynamic: author-email
31
+ Dynamic: classifier
32
+ Dynamic: description
33
+ Dynamic: description-content-type
34
+ Dynamic: home-page
35
+ Dynamic: license-file
36
+ Dynamic: requires-dist
37
+ Dynamic: requires-python
38
+ Dynamic: summary
29
39
 
30
40
  # SURE: SUccinct REpresentation of cells
31
41
  SURE introduces a vector quantization-based probabilistic generative model for calling metacells and use them as landmarks that form a coordinate system for cell ID. Analyzing single-cell omics data in a manner analogous to reference genome-based genomic analysis.
{sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/SURE.py RENAMED
@@ -102,7 +102,7 @@ class SURE(nn.Module):
102
102
  z_dist: Literal['normal','studentt','laplacian','cauchy','gumbel'] = 'normal',
103
103
  loss_func: Literal['negbinomial','poisson','multinomial'] = 'negbinomial',
104
104
  inverse_dispersion: float = 10.0,
105
- use_zeroinflate: bool = False,
105
+ use_zeroinflate: bool = True,
106
106
  hidden_layers: list = [500],
107
107
  hidden_layer_activation: Literal['relu','softplus','leakyrelu','linear'] = 'relu',
108
108
  nn_dropout: float = 0.1,
{sure_tools-1.0.1 → sure_tools-1.0.3}/SURE_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.1
1
+ Metadata-Version: 2.4
2
2
  Name: SURE-tools
3
- Version: 1.0.1
3
+ Version: 1.0.3
4
4
  Summary: Succinct Representation of Single Cells
5
5
  Home-page: https://github.com/ZengFLab/SURE
6
6
  Author: Feng Zeng
@@ -26,6 +26,16 @@ Requires-Dist: networkx
26
26
  Requires-Dist: matplotlib
27
27
  Requires-Dist: seaborn
28
28
  Requires-Dist: fa2-modified
29
+ Dynamic: author
30
+ Dynamic: author-email
31
+ Dynamic: classifier
32
+ Dynamic: description
33
+ Dynamic: description-content-type
34
+ Dynamic: home-page
35
+ Dynamic: license-file
36
+ Dynamic: requires-dist
37
+ Dynamic: requires-python
38
+ Dynamic: summary
29
39
 
30
40
  # SURE: SUccinct REpresentation of cells
31
41
  SURE introduces a vector quantization-based probabilistic generative model for calling metacells and use them as landmarks that form a coordinate system for cell ID. Analyzing single-cell omics data in a manner analogous to reference genome-based genomic analysis.
{sure_tools-1.0.1 → sure_tools-1.0.3}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setup(
7
7
  name='SURE-tools',
8
- version='1.0.1',
8
+ version='1.0.3',
9
9
  description='Succinct Representation of Single Cells',
10
10
  long_description=long_description,
11
11
  long_description_content_type="text/markdown",
{sure_tools-1.0.1 → sure_tools-1.0.3}/LICENSE RENAMED
File without changes
{sure_tools-1.0.1 → sure_tools-1.0.3}/README.md RENAMED
File without changes
{sure_tools-1.0.1 → sure_tools-1.0.3}/SURE/__init__.py RENAMED
File without changes
{sure_tools-1.0.1 → sure_tools-1.0.3}/setup.cfg RENAMED
File without changes