SIMPApy 0.3.2__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. {simpapy-0.3.2 → simpapy-0.3.3}/PKG-INFO +2 -2
  2. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/__init__.py +4 -1
  3. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/PKG-INFO +2 -2
  4. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/requires.txt +1 -1
  5. {simpapy-0.3.2 → simpapy-0.3.3}/pyproject.toml +1 -1
  6. {simpapy-0.3.2 → simpapy-0.3.3}/LICENSE.txt +0 -0
  7. {simpapy-0.3.2 → simpapy-0.3.3}/README.md +0 -0
  8. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/SIMPA.py +0 -0
  9. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/analyze.py +0 -0
  10. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/core.py +0 -0
  11. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/preprocess.py +0 -0
  12. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/ranking.py +0 -0
  13. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/visualize.py +0 -0
  14. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/SOURCES.txt +0 -0
  15. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/dependency_links.txt +0 -0
  16. {simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/top_level.txt +0 -0
  17. {simpapy-0.3.2 → simpapy-0.3.3}/setup.cfg +0 -0
  18. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_SIMPA.py +0 -0
  19. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_analyze.py +0 -0
  20. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_core.py +0 -0
  21. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_preprocess.py +0 -0
  22. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_ranking.py +0 -0
  23. {simpapy-0.3.2 → simpapy-0.3.3}/tests/test_visualize.py +0 -0
{simpapy-0.3.2 → simpapy-0.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SIMPApy
3
- Version: 0.3.2
3
+ Version: 0.3.3
4
4
  Summary: Normalized Single Sample Integrated Multiomics Pathway Analysis
5
5
  Author-email: Hasan Alsharoh <hasanalsharoh@gmail.com>
6
6
  License: Apache License (2.0)
@@ -25,7 +25,7 @@ Requires-Dist: scikit-learn==1.5.1
25
25
  Requires-Dist: seaborn==0.13.2
26
26
  Requires-Dist: statsmodels==0.14.1
27
27
  Requires-Dist: ipywidgets==8.1.5
28
- Requires-Dist: pillow==10.4.0
28
+ Requires-Dist: pillow==12.1.1
29
29
  Requires-Dist: kaleido==0.1.0.post1
30
30
  Dynamic: license-file
31
31
 
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/__init__.py RENAMED
@@ -10,6 +10,9 @@ The package includes the following modules:
10
10
  - ranking: Contains functions for calculating ranking and mean signed deviation.
11
11
  - simpa: Contains the main functions for running SIMPA.
12
12
  - visualize: Contains functions for creating interactive plots of from SIMPA results.
13
+ - preprocess: Contains functions for preprocessing multi-omics data and creating aggregated dataframes for SIMPA module.
14
+ - analyze: Contains functions for analyzing SIMPA results, including calculating group differences, plotting volcano plots,
15
+ and calculating and plotting correlations between omics layers.
13
16
  """
14
17
  from .core import _sopa, sopa, load_sopa
15
18
  from .ranking import calculate_ranking, _calculate_msd
@@ -18,7 +21,7 @@ from .preprocess import _extract_tag_genes, _create_aggregated_dataframes, proce
18
21
  from .visualize import _create_traces, create_interactive_plot
19
22
  from .analyze import group_diffs, plot_volcano, calculate_correlation, plot_correlation_scatterplot
20
23
 
21
- __version__ = "0.3.2"
24
+ __version__ = "0.3.3"
22
25
  __all__ = [
23
26
  "calculate_ranking",
24
27
  "sopa",
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: SIMPApy
3
- Version: 0.3.2
3
+ Version: 0.3.3
4
4
  Summary: Normalized Single Sample Integrated Multiomics Pathway Analysis
5
5
  Author-email: Hasan Alsharoh <hasanalsharoh@gmail.com>
6
6
  License: Apache License (2.0)
@@ -25,7 +25,7 @@ Requires-Dist: scikit-learn==1.5.1
25
25
  Requires-Dist: seaborn==0.13.2
26
26
  Requires-Dist: statsmodels==0.14.1
27
27
  Requires-Dist: ipywidgets==8.1.5
28
- Requires-Dist: pillow==10.4.0
28
+ Requires-Dist: pillow==12.1.1
29
29
  Requires-Dist: kaleido==0.1.0.post1
30
30
  Dynamic: license-file
31
31
 
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy.egg-info/requires.txt RENAMED
@@ -9,5 +9,5 @@ scikit-learn==1.5.1
9
9
  seaborn==0.13.2
10
10
  statsmodels==0.14.1
11
11
  ipywidgets==8.1.5
12
- pillow==10.4.0
12
+ pillow==12.1.1
13
13
  kaleido==0.1.0.post1
{simpapy-0.3.2 → simpapy-0.3.3}/pyproject.toml RENAMED
@@ -31,7 +31,7 @@ dependencies = [
31
31
  "seaborn==0.13.2",
32
32
  "statsmodels==0.14.1",
33
33
  "ipywidgets==8.1.5",
34
- "pillow==10.4.0",
34
+ "pillow==12.1.1",
35
35
  "kaleido==0.1.0.post1"
36
36
  ]
37
37
 
{simpapy-0.3.2 → simpapy-0.3.3}/LICENSE.txt RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/README.md RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/SIMPA.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/analyze.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/core.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/preprocess.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/ranking.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/SIMPApy/visualize.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/setup.cfg RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/tests/test_SIMPA.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/tests/test_analyze.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/tests/test_core.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/tests/test_ranking.py RENAMED
File without changes
{simpapy-0.3.2 → simpapy-0.3.3}/tests/test_visualize.py RENAMED
File without changes