SAMBA-ilum 1.1.0.1__tar.gz → 1.1.0.102__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/PKG-INFO +1 -1
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/__main__.py +1 -1
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/HeteroStructure_Generator.py +148 -32
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/setup.py +1 -1
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/LICENSE.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/README.md +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/requires.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/SAMBA_ilum.egg-info/top_level.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/__init__.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/BZ_2D.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/HeteroStructure_Generator_Backup_001.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/HeteroStructure_Generator_OLD.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/Hubbard_U_values.txt +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/_info_pseudo.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/a-scan.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/a-scan_analysis.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/bader +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/bader_poscar.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/bader_update.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/cell_check.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/charge_transfer.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/chgsum.pl +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/contcar_update.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/data-base_json.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/data-base_union.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/energy_scan.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/hubbard_correction.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/job.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/kpoints.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/lattice_plot3d.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/make_files.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/output.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/poscar_fix_direct_coord.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/potcar.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/vdW_DF.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/xy-scan.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/xy-scan_analysis.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/xyz-scan.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/xyz-scan_analysis.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/z-scan.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/z-scan_analysis.py +0 -0
- {samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/setup.cfg +0 -0
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@@ -349,12 +349,13 @@ for k in range(n_Lattice):
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number += 1; cell_write = 0
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porc = (number/n_passos)*100
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#---------------------------
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if
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if porc >= temp:
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bar_length = 50
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filled_length = int(bar_length * porc // 100)
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bar = '#' * filled_length + '-' * (bar_length - filled_length)
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print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
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sys.stdout.flush()
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temp += 1 # Atualiza a cada 1%
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#------------------------------------------------------------------------------
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v1x = float(vx[i]); v1y = float(vy[i]); v1z = float(vz[i]); d1 = float(dist[i])
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cell_Lattice.close()
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except Exception as e:
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0 == 0
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#-----------------------------------------
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print(f"\rProgress completed !{' ' * 60}")
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#-----------------------------------------
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files = os.listdir(diret + dir_cells_Lattice)
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#--------------------------------------------
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print(f'==============================================================')
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files = os.listdir(diret + 'cells_Lattice1')
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#=============================================
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temp = 1.0; number = -1; n_passos = len(files)
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#-----------------------
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for s in range(len(files)):
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#----------------------
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number += 1; cont = 0
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porc = (number/(s+1))*100
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#-------------------------
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bar_length = 50
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filled_length = int(bar_length * porc // 100)
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bar = '#' * filled_length + '-' * (bar_length - filled_length)
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print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
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sys.stdout.flush()
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temp += 1
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if (n_Lattice == 2):
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if os.path.isfile(diret + 'cells_Lattice1' + '/' + files[s]):
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#===============================================================================
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#-----------------
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Structures.close()
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#-----------------------------------------
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print(f"\rProgress completed !{' ' * 60}")
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#-----------------------------------------
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os.remove(diret + 'Matching_Lattices' + '/' + files[s])
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#==============================================
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temp = 1.0; number = -1; n_passos = len(files)
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#-----------------------
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for s in range(len(files)):
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#----------------------
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number += 1; cont = 0
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porc = (number/(s+1))*100
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#-------------------------
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bar_length = 50
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filled_length = int(bar_length * porc // 100)
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bar = '#' * filled_length + '-' * (bar_length - filled_length)
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print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
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sys.stdout.flush()
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temp += 1
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#-----------------------------------------------------------------------------------------------
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files_lattice3 = files[s].replace("Matching_Lattices","Cells_Lattice").replace("_12.dat",".dat")
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#-----------------------------------------------------------------------------------------------
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cont = 1
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#-------
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print(f'Progress {s+1}/{len(files)}')
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#------------------------------------
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if (cont == 1):
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#-----------------------------------------------------------------
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temp_area = files[s].replace('.dat', '').replace('_', ' ').split()
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Structures.close()
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#------------------------------------------------------
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os.remove(diret + 'Matching_Lattices' + '/' + files[s])
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#----------------------------------------------------------
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#-----------------------------------------
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#==============================================
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print(f'================================================================')
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if (n_test == 1):
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temp = 1.0; number = -1; n_passos = len(dir_matchings)
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#-----------------------
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for s in range(len(dir_matchings)):
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#----------------------
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number += 1; cont = 0
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porc = (number/(s+1))*100
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#-------------------------
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if porc >= temp:
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bar_length = 50
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filled_length = int(bar_length * porc // 100)
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bar = '#' * filled_length + '-' * (bar_length - filled_length)
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print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
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sys.stdout.flush()
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temp += 1
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#------------------------------------------------
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dir_temp_m = dir_matchings[s].replace('.dat', '')
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#------------------------------------------------
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print(f"error detected: {e}")
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match.close()
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#-----------------------------------------
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#-----------------------------------------
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n += 1
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print(f'=============================================================')
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if (n_test == 1):
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temp = 1.0; number = -1; n_passos = len(dir_matchings)
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#-----------------------
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for s in range(len(dir_matchings)):
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#----------------------
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number += 1; cont = 0
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porc = (number/(s+1))*100
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#-------------------------
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if porc >= temp:
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bar_length = 50
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filled_length = int(bar_length * porc // 100)
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bar = '#' * filled_length + '-' * (bar_length - filled_length)
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print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
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sys.stdout.flush()
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temp += 1
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#------------------------------------------------
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dir_temp_m = dir_matchings[s].replace('.dat', '')
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#------------------------------------------------
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#----------------------------------------------------------------------------------------------------
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if (dist_1 > crit_distorc_lattice or dist_2 > crit_distorc_lattice or dist_3 > crit_distorc_lattice):
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os.remove(diret2 + dir_temp_m + '/POSCAR_' + str(i+1) + '.vasp')
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#-----------------------------------------
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print(f"\rProgress completed !{' ' * 60}")
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#-----------------------------------------
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#=====================================================================
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files0 = os.listdir(diret2)
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n_exclusion = 0
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|
1416
1472
|
|
|
1473
|
+
temp = 1.0; number = -1; n_passos = len(files0)
|
|
1474
|
+
#---------------------------
|
|
1417
1475
|
for s in range(len(files0)):
|
|
1418
|
-
|
|
1419
|
-
|
|
1476
|
+
#-----------------------
|
|
1477
|
+
number += 1; cont = 0
|
|
1478
|
+
porc = (number/(s+1))*100
|
|
1479
|
+
#-------------------------
|
|
1480
|
+
if porc >= temp:
|
|
1481
|
+
bar_length = 50
|
|
1482
|
+
filled_length = int(bar_length * porc // 100)
|
|
1483
|
+
bar = '#' * filled_length + '-' * (bar_length - filled_length)
|
|
1484
|
+
print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
|
|
1485
|
+
sys.stdout.flush()
|
|
1486
|
+
temp += 1
|
|
1487
|
+
|
|
1420
1488
|
#---------------------
|
|
1421
1489
|
dir_temp_m = files0[s]
|
|
1422
1490
|
#---------------------
|
|
@@ -1449,6 +1517,9 @@ for s in range(len(files0)):
|
|
|
1449
1517
|
|
|
1450
1518
|
for i in range(len(files)):
|
|
1451
1519
|
os.remove(diret2 + files0[s] + '/' + 'temp_' + str(i+1) + '.vasp')
|
|
1520
|
+
#-----------------------------------------
|
|
1521
|
+
print(f"\rProgress completed !{' ' * 60}")
|
|
1522
|
+
#-----------------------------------------
|
|
1452
1523
|
|
|
1453
1524
|
#---------------
|
|
1454
1525
|
n_structures = 0
|
|
@@ -1497,9 +1568,21 @@ print(f'======================================')
|
|
|
1497
1568
|
files0 = os.listdir(diret2)
|
|
1498
1569
|
n_exclusion = 0
|
|
1499
1570
|
|
|
1571
|
+
temp = 1.0; number = -1; n_passos = len(files0)
|
|
1572
|
+
#---------------------------
|
|
1500
1573
|
for s in range(len(files0)):
|
|
1501
|
-
|
|
1502
|
-
|
|
1574
|
+
#-----------------------
|
|
1575
|
+
number += 1; cont = 0
|
|
1576
|
+
porc = (number/(s+1))*100
|
|
1577
|
+
#-------------------------
|
|
1578
|
+
if porc >= temp:
|
|
1579
|
+
bar_length = 50
|
|
1580
|
+
filled_length = int(bar_length * porc // 100)
|
|
1581
|
+
bar = '#' * filled_length + '-' * (bar_length - filled_length)
|
|
1582
|
+
print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
|
|
1583
|
+
sys.stdout.flush()
|
|
1584
|
+
temp += 1
|
|
1585
|
+
|
|
1503
1586
|
#---------------------
|
|
1504
1587
|
dir_temp_m = files0[s]
|
|
1505
1588
|
#-------------------------------------
|
|
@@ -1586,6 +1669,9 @@ for s in range(len(files0)):
|
|
|
1586
1669
|
if os.path.exists(diret2 + files0[s] + '/' + files[j]):
|
|
1587
1670
|
os.remove(diret2 + files0[s] + '/' + files[j])
|
|
1588
1671
|
n_exclusion += 1
|
|
1672
|
+
#-----------------------------------------
|
|
1673
|
+
print(f"\rProgress completed !{' ' * 60}")
|
|
1674
|
+
#-----------------------------------------
|
|
1589
1675
|
|
|
1590
1676
|
#---------------
|
|
1591
1677
|
n_structures = 0
|
|
@@ -1644,9 +1730,21 @@ while n_exclusion_cont != 2:
|
|
|
1644
1730
|
files = os.listdir(diret2)
|
|
1645
1731
|
n_exclusion = 0
|
|
1646
1732
|
|
|
1733
|
+
temp = 1.0; number = -1; n_passos = len(files)
|
|
1734
|
+
#--------------------------
|
|
1647
1735
|
for i in range(len(files)):
|
|
1648
|
-
|
|
1649
|
-
|
|
1736
|
+
#----------------------
|
|
1737
|
+
number += 1; cont = 0
|
|
1738
|
+
porc = (number/(s+1))*100
|
|
1739
|
+
#-------------------------
|
|
1740
|
+
if porc >= temp:
|
|
1741
|
+
bar_length = 50
|
|
1742
|
+
filled_length = int(bar_length * porc // 100)
|
|
1743
|
+
bar = '#' * filled_length + '-' * (bar_length - filled_length)
|
|
1744
|
+
print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
|
|
1745
|
+
sys.stdout.flush()
|
|
1746
|
+
temp += 1
|
|
1747
|
+
|
|
1650
1748
|
#----------------
|
|
1651
1749
|
files_delete = []
|
|
1652
1750
|
#------------------------------------
|
|
@@ -1727,6 +1825,10 @@ while n_exclusion_cont != 2:
|
|
|
1727
1825
|
if os.path.exists(diret2 + files[j]):
|
|
1728
1826
|
os.remove(diret2 + files[j])
|
|
1729
1827
|
n_exclusion += 1
|
|
1828
|
+
#-----------------------------------------
|
|
1829
|
+
print(f"\rProgress completed !{' ' * 60}")
|
|
1830
|
+
#-----------------------------------------
|
|
1831
|
+
|
|
1730
1832
|
#-------------------------
|
|
1731
1833
|
files = os.listdir(diret2)
|
|
1732
1834
|
n_structures = len(files)
|
|
@@ -1912,10 +2014,20 @@ vector = sorted(set(shift1_xy))
|
|
|
1912
2014
|
#-------------------------
|
|
1913
2015
|
files = os.listdir(diret2)
|
|
1914
2016
|
#-------------------------
|
|
2017
|
+
temp = 1.0; number = -1; n_passos = len(files)
|
|
2018
|
+
#--------------------------
|
|
1915
2019
|
for i in range(len(files)):
|
|
1916
|
-
|
|
1917
|
-
|
|
1918
|
-
|
|
2020
|
+
#----------------------
|
|
2021
|
+
number += 1; cont = 0
|
|
2022
|
+
porc = (number/(s+1))*100
|
|
2023
|
+
#-------------------------
|
|
2024
|
+
if porc >= temp:
|
|
2025
|
+
bar_length = 50
|
|
2026
|
+
filled_length = int(bar_length * porc // 100)
|
|
2027
|
+
bar = '#' * filled_length + '-' * (bar_length - filled_length)
|
|
2028
|
+
print(f'\rProgress: |{bar}| {porc:.1f}%', end="")
|
|
2029
|
+
sys.stdout.flush()
|
|
2030
|
+
temp += 1
|
|
1919
2031
|
|
|
1920
2032
|
poscar = open(dir1 + files[i], "r")
|
|
1921
2033
|
poscar2 = open(dir2 + files[i], "w")
|
|
@@ -1957,6 +2069,10 @@ for i in range(len(files)):
|
|
|
1957
2069
|
#-------------
|
|
1958
2070
|
poscar.close()
|
|
1959
2071
|
poscar2.close()
|
|
2072
|
+
#-----------------------------------------
|
|
2073
|
+
print(f"\rProgress completed !{' ' * 60}")
|
|
2074
|
+
#-----------------------------------------
|
|
2075
|
+
|
|
1960
2076
|
#------------------
|
|
1961
2077
|
shutil.rmtree(dir1)
|
|
1962
2078
|
os.rename(dir2,dir1)
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/HeteroStructure_Generator_Backup_001.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{samba_ilum-1.1.0.1 → samba_ilum-1.1.0.102}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|