SAMBA-ilum 1.0.0.504__tar.gz → 1.0.0.506__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/PKG-INFO +1 -1
  2. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
  3. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/__main__.py +1 -1
  4. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/cell_check.py +12 -4
  5. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/make_files.py +11 -8
  6. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/setup.py +1 -1
  7. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/LICENSE.txt +0 -0
  8. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/README.md +0 -0
  9. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
  10. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
  11. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
  12. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/requires.txt +0 -0
  13. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/SAMBA_ilum.egg-info/top_level.txt +0 -0
  14. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/__init__.py +0 -0
  15. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/BZ_2D.py +0 -0
  16. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/HeteroStructure_Generator.py +0 -0
  17. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
  18. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
  19. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
  20. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
  21. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
  22. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
  23. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
  24. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
  25. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
  26. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
  27. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
  28. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
  29. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
  30. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
  31. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
  32. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
  33. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
  34. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
  35. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
  36. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
  37. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
  38. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
  39. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
  40. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/_info_pseudo.py +0 -0
  41. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/a-scan.py +0 -0
  42. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/a-scan_analysis.py +0 -0
  43. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/bader +0 -0
  44. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/bader_poscar.py +0 -0
  45. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/bader_update.py +0 -0
  46. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/charge_transfer.py +0 -0
  47. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/chgsum.pl +0 -0
  48. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/contcar_update.py +0 -0
  49. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/data-base_json.py +0 -0
  50. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/data-base_union.py +0 -0
  51. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/energy_scan.py +0 -0
  52. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/hubbard_correction.py +0 -0
  53. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/job.py +0 -0
  54. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/kpoints.py +0 -0
  55. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/lattice_plot3d.py +0 -0
  56. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/output.py +0 -0
  57. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/potcar.py +0 -0
  58. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/vdW_DF.py +0 -0
  59. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/xy-scan.py +0 -0
  60. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/xy-scan_analysis.py +0 -0
  61. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/xyz-scan.py +0 -0
  62. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/xyz-scan_analysis.py +0 -0
  63. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/z-scan.py +0 -0
  64. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/samba_ilum/src/z-scan_analysis.py +0 -0
  65. {samba_ilum-1.0.0.504 → samba_ilum-1.0.0.506}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.504
3
+ Version: 1.0.0.506
4
4
  Summary: ...
5
5
  Author: Augusto de Lelis Araujo
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  Author-email: augusto-lelis@outlook.com
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.504
3
+ Version: 1.0.0.506
4
4
  Summary: ...
5
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  Author: Augusto de Lelis Araujo
6
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  Author-email: augusto-lelis@outlook.com
@@ -16,7 +16,7 @@ dir_samba = os.path.dirname(os.path.realpath(__file__))
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  print(f'{dir_samba}')
17
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  #--------------------
18
18
 
19
- version = '1.0.0.504'
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+ version = '1.0.0.506'
20
20
 
21
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  print(" ")
22
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  print("=============================================================")
@@ -89,20 +89,24 @@ if (len(supercell_files) > 0):
89
89
  #------------------------------------
90
90
 
91
91
 
92
- #========================================================
93
- # Chegando e Corrigindo o eixo de rotação das células ===
94
- #========================================================
92
+ #======================================================
93
+ # Chegando/Corrigindo o eixo de rotação das células ===
94
+ #======================================================
95
95
  axis_correction = 0
96
96
  #------------------
97
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  for name in files0:
98
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  Lattice = os.path.join(poscar_dir_path, name)
99
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  #--------------------------------------------
100
+ poscar = open(Lattice, 'r')
101
+ VTemp = poscar.readline(); VTemp = str(VTemp)
102
+ poscar.close()
103
+ #-------------
100
104
  try:
101
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  estrutura = Structure.from_file(Lattice)
102
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  sga = SpacegroupAnalyzer(estrutura, symprec=1e-3)
103
107
  operacoes_0 = sga.get_symmetry_operations()
104
108
  operacoes_1 = sga.get_symmetry_operations(cartesian=True)
105
-
109
+ #-------------
106
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  angulos_z = []
107
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  angulos_z_na_origem = []
108
112
  #--------------------------------------------------
@@ -195,6 +199,10 @@ for name in files0:
195
199
  print(f"-------------------------------------------------------------")
196
200
  except np.linalg.LinAlgError:
197
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  print("ERRO: Não foi possível calcular o deslocamento devido a um erro numérico.")
202
+ #-------------------------------------------------------
203
+ with open(Lattice, 'r') as file: line = file.readlines()
204
+ line[0] = VTemp
205
+ with open(Lattice, 'w') as file: file.writelines(line)
198
206
  #---------------------
199
207
  except Exception as e:
200
208
  print(f"Erro Crítico ao processar o file {name}: {e}")
@@ -7,6 +7,7 @@ from pymatgen.analysis.structure_matcher import StructureMatcher
7
7
  #---------------------------------------------------------------
8
8
  import random
9
9
  import shutil
10
+ import glob
10
11
  import uuid
11
12
  import sys
12
13
  import os
@@ -19,13 +20,14 @@ print("")
19
20
 
20
21
 
21
22
  #----------------------------------------------------------------------------
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- # Função para simular a digitação de comandos no terminal Linux -------------
23
+ # Função para excluir arquivos ocultos --------------------------------------
23
24
  #----------------------------------------------------------------------------
24
- def command_terminal(command):
25
- command = command.split()
26
- vector_command = []
27
- for i in range(len(command)): vector_command.append(command[i])
28
- subprocess.run(vector_command)
25
+ def delete_hidden_files(target_directory):
26
+ search_files = os.path.join(target_directory, '.*')
27
+ for item in glob.glob(search_files):
28
+ try:
29
+ if os.path.isfile(item): os.remove(item)
30
+ except OSError: pass
29
31
 
30
32
  #----------------------------------------------------------------------------
31
33
  # Função para listar todas os arquivos dentro de um dado diretório ----------
@@ -142,8 +144,9 @@ print("Criando diretórios e copiando arquivos POSCAR e de input do VASProcar --
142
144
  print("-------------------------------------------------------------------------")
143
145
 
144
146
  #-----------------------------------------------------
145
- command_terminal('rm ' + dir_files + '/Structures/.*')
146
- #-----------------------------------------------------
147
+ structures_dir = os.path.join(dir_files, 'Structures')
148
+ delete_hidden_files(structures_dir)
149
+ #----------------------------------
147
150
 
148
151
  files = list_files(dir_files + '/Structures')
149
152
  #--------------------------------------------
@@ -6,7 +6,7 @@ import json
6
6
 
7
7
  setup(
8
8
  name = "SAMBA_ilum",
9
- version = "1.0.0.504",
9
+ version = "1.0.0.506",
10
10
  entry_points={'console_scripts': ['samba_ilum = samba_ilum:main']},
11
11
  description = "...",
12
12
  author = "Augusto de Lelis Araujo",
File without changes
File without changes