SAMBA-ilum 1.0.0.495__tar.gz → 1.0.0.496__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/PKG-INFO +1 -1
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/__main__.py +1 -1
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator.py +1 -20
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/rotation_axis_check.py +44 -3
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/setup.py +1 -1
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/LICENSE.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/README.md +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/requires.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/top_level.txt +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/__init__.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/BZ_2D.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator_OLD_1.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator_OLD_2.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/_info_pseudo.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/a-scan.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/a-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader_poscar.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader_update.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/charge_transfer.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/chgsum.pl +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/contcar_update.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/data-base_json.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/data-base_union.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/energy_scan.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/hubbard_correction.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/job.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/kpoints.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/lattice_plot3d.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/make_files.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/output.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/potcar.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/vdW_DF.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xy-scan.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xy-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xyz-scan.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xyz-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/z-scan.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/z-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/setup.cfg +0 -0
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# SAMBA_ilum Copyright (C) 2024 - Closed source
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print("==================================")
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print("Espere um momento ================")
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print("==================================")
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print("")
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# from pymatgen.io.vasp import Poscar
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# from pymatgen.core import Structure
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# from pymatgen.analysis.structure_matcher import StructureMatcher
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@@ -70,9 +64,7 @@ d_origin_y = [0]*3
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#-----------------
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# Testando a compatibilidade dos arquivos POSCAR ---
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#---------------------------------------------------
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#-----------------------------------------------------------------------------------------------------
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A1x0 = []; A1y0 = []; A2x0 = []; A2y0 = [] # Listas para armazenar os vetores A1 e A2 de cada rede
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#-----------------------------------------------------------------------------------------------------
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for k in range(n_Lattice):
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#--------------------------------------------------------------------------------------------------------------
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A1x0.append(A1x); A1y0.append(A1y); A2x0.append(A2x); A2y0.append(A2y) # Armazenando os vetores A1 e A2 de cada rede
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#------------------------------------------------------------------------------------------------------------------------
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if ((A1z != 0.0) or (A2z != 0.0) or (A3x != 0.0) or (A3y != 0.0)):
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print(f' ')
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print(f'========================================')
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print(f'Verifique os arquivos POSCAR utilizados!')
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print(f'INCOMPATIBILIDADE com o código detectada')
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print(f'========================================')
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print(f' ')
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#==========
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sys.exit()
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#=========
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#-------------------------------------------------------
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# Vetores A1 e A2
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A1 = np.array([A1x, A1y])
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A2 = np.array([A2x, A2y])
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# SAMBA_ilum Copyright (C) 2024 - Closed source
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print("==================================")
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print("Espere um momento ================")
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print("==================================")
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print("")
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from pymatgen.io.vasp import Poscar
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from pymatgen.core import Structure
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from pymatgen.analysis.structure_matcher import StructureMatcher
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import os
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#---------------------------------------------------
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# Testando a compatibilidade dos arquivos POSCAR ---
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#---------------------------------------------------
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A1x0 = []; A1y0 = []; A2x0 = []; A2y0 = []
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#--------------------------------------------
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for k in range(n_Lattice):
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#---------------------
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Lattice = dir_files + '/' + vLattice[k]
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poscar = open(Lattice, "r")
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#-------------------------------------------
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for i in range(2): VTemp = poscar.readline()
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param = float(VTemp)
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#-------------------------------------------
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A1 = poscar.readline().split(); A1x = float(A1[0])*param; A1y = float(A1[1])*param; A1z = float(A1[2])*param
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A2 = poscar.readline().split(); A2x = float(A2[0])*param; A2y = float(A2[1])*param; A2z = float(A2[2])*param
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A3 = poscar.readline().split(); A3x = float(A3[0])*param; A3y = float(A3[1])*param; A3z = float(A3[2])*param
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#--------------------------------------------------------------------------------------------------------------
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A1x0.append(A1x); A1y0.append(A1y); A2x0.append(A2x); A2y0.append(A2y) # Armazenando os vetores A1 e A2 de cada rede
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#------------------------------------------------------------------------------------------------------------------------
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if ((A1z != 0.0) or (A2z != 0.0) or (A3x != 0.0) or (A3y != 0.0)):
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print(f' ')
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print(f'========================================')
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print(f'Verifique os arquivos POSCAR utilizados!')
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print(f'INCOMPATIBILIDADE com o código detectada')
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if (A1z != 0.0):
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print(f'O vetor A1 deve possuir a forma A1 = [A1x, A1y, 0.0]')
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if (A2z != 0.0):
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print(f'O vetor A2 deve possuir a forma A2 = [A2x, A2y, 0.0]')
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if ((A3x != 0.0) or (A3y != 0.0)):
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print(f'O vetor A3 deve possuir a forma A3 = [0.0, 0.0, A3z]')
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print(f'========================================')
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print(f' ')
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#==========
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sys.exit()
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#=========
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# Listando os arquivos dentro do diretório "dir_poscar"
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poscar_dir_path = os.path.join(dir_files, dir_poscar)
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files0 = [name for name in os.listdir(poscar_dir_path) if os.path.isfile(os.path.join(poscar_dir_path, name))]
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print(f"POSCAR file: {name}")
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print(f"Discrepância encontrada em relação ao ângulo de rotação em torno do eixo Z")
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print(f"
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print(f"Min. Rotation Angle: {int(menor_0)}º / Angle at Origin: {int(menor_1)}º")
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op_alvo = None
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for op_cart in operacoes_1:
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R_cart = op_cart.rotation_matrix
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deslocamento_frac = np.array([-p_direto[0], -p_direto[1], 0.0])
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print(f"Coordenadas diretas do eixo de rotação apropriado: ({p_direto[0]:.9f}, {p_direto[1]:.9f})")
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print(f"Movendo arquivo original para a pasta 'POSCAR_original' e criando versão corrigida.")
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estrutura_corrigida = estrutura.copy()
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indices_dos_sites = list(range(len(estrutura_corrigida)))
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# Salvar o arquivo corrigido com o nome_original no diretório original.
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Lattice_new_file = os.path.join(poscar_dir_path, name)
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estrutura_corrigida.to(fmt="poscar", filename=Lattice_new_file)
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print(f"Estrutura corrigida salva como '{name}' no diretório '{dir_poscar}'.")
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print(f"-------------------------------------------------------------")
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