SAMBA-ilum 1.0.0.495__tar.gz → 1.0.0.496__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (67) hide show
  1. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/PKG-INFO +1 -1
  2. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
  3. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/__main__.py +1 -1
  4. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator.py +1 -20
  5. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/rotation_axis_check.py +44 -3
  6. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/setup.py +1 -1
  7. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/LICENSE.txt +0 -0
  8. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/README.md +0 -0
  9. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
  10. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
  11. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
  12. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/requires.txt +0 -0
  13. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/SAMBA_ilum.egg-info/top_level.txt +0 -0
  14. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/__init__.py +0 -0
  15. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/BZ_2D.py +0 -0
  16. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator_OLD_1.py +0 -0
  17. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/HeteroStructure_Generator_OLD_2.py +0 -0
  18. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
  19. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
  20. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
  21. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
  22. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
  23. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
  24. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
  25. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
  26. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
  27. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
  28. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
  29. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
  30. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
  31. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
  32. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
  33. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
  34. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
  35. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
  36. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
  37. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
  38. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
  39. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
  40. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
  41. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/_info_pseudo.py +0 -0
  42. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/a-scan.py +0 -0
  43. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/a-scan_analysis.py +0 -0
  44. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader +0 -0
  45. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader_poscar.py +0 -0
  46. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/bader_update.py +0 -0
  47. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/charge_transfer.py +0 -0
  48. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/chgsum.pl +0 -0
  49. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/contcar_update.py +0 -0
  50. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/data-base_json.py +0 -0
  51. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/data-base_union.py +0 -0
  52. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/energy_scan.py +0 -0
  53. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/hubbard_correction.py +0 -0
  54. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/job.py +0 -0
  55. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/kpoints.py +0 -0
  56. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/lattice_plot3d.py +0 -0
  57. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/make_files.py +0 -0
  58. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/output.py +0 -0
  59. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/potcar.py +0 -0
  60. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/vdW_DF.py +0 -0
  61. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xy-scan.py +0 -0
  62. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xy-scan_analysis.py +0 -0
  63. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xyz-scan.py +0 -0
  64. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/xyz-scan_analysis.py +0 -0
  65. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/z-scan.py +0 -0
  66. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/samba_ilum/src/z-scan_analysis.py +0 -0
  67. {samba_ilum-1.0.0.495 → samba_ilum-1.0.0.496}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.495
3
+ Version: 1.0.0.496
4
4
  Summary: ...
5
5
  Author: Augusto de Lelis Araujo
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6
  Author-email: augusto-lelis@outlook.com
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.495
3
+ Version: 1.0.0.496
4
4
  Summary: ...
5
5
  Author: Augusto de Lelis Araujo
6
6
  Author-email: augusto-lelis@outlook.com
@@ -16,7 +16,7 @@ dir_samba = os.path.dirname(os.path.realpath(__file__))
16
16
  print(f'{dir_samba}')
17
17
  #--------------------
18
18
 
19
- version = '1.0.0.495'
19
+ version = '1.0.0.496'
20
20
 
21
21
  print(" ")
22
22
  print("=============================================================")
@@ -1,12 +1,6 @@
1
1
  # SAMBA_ilum Copyright (C) 2024 - Closed source
2
2
 
3
3
 
4
- print("==================================")
5
- print("Espere um momento ================")
6
- print("==================================")
7
- print("")
8
-
9
-
10
4
  # from pymatgen.io.vasp import Poscar
11
5
  # from pymatgen.core import Structure
12
6
  # from pymatgen.analysis.structure_matcher import StructureMatcher
@@ -70,9 +64,7 @@ d_origin_y = [0]*3
70
64
  #-----------------
71
65
 
72
66
 
73
- #---------------------------------------------------
74
- # Testando a compatibilidade dos arquivos POSCAR ---
75
- #---------------------------------------------------
67
+ #-----------------------------------------------------------------------------------------------------
76
68
  A1x0 = []; A1y0 = []; A2x0 = []; A2y0 = [] # Listas para armazenar os vetores A1 e A2 de cada rede
77
69
  #-----------------------------------------------------------------------------------------------------
78
70
  for k in range(n_Lattice):
@@ -89,17 +81,6 @@ for k in range(n_Lattice):
89
81
  #--------------------------------------------------------------------------------------------------------------
90
82
  A1x0.append(A1x); A1y0.append(A1y); A2x0.append(A2x); A2y0.append(A2y) # Armazenando os vetores A1 e A2 de cada rede
91
83
  #------------------------------------------------------------------------------------------------------------------------
92
- if ((A1z != 0.0) or (A2z != 0.0) or (A3x != 0.0) or (A3y != 0.0)):
93
- print(f' ')
94
- print(f'========================================')
95
- print(f'Verifique os arquivos POSCAR utilizados!')
96
- print(f'INCOMPATIBILIDADE com o código detectada')
97
- print(f'========================================')
98
- print(f' ')
99
- #==========
100
- sys.exit()
101
- #=========
102
- #-------------------------------------------------------
103
84
  # Vetores A1 e A2
104
85
  A1 = np.array([A1x, A1y])
105
86
  A2 = np.array([A2x, A2y])
@@ -1,6 +1,11 @@
1
1
  # SAMBA_ilum Copyright (C) 2024 - Closed source
2
2
 
3
3
 
4
+ print("==================================")
5
+ print("Espere um momento ================")
6
+ print("==================================")
7
+ print("")
8
+
4
9
  from pymatgen.io.vasp import Poscar
5
10
  from pymatgen.core import Structure
6
11
  from pymatgen.analysis.structure_matcher import StructureMatcher
@@ -12,6 +17,43 @@ import sys
12
17
  import os
13
18
 
14
19
 
20
+ #---------------------------------------------------
21
+ # Testando a compatibilidade dos arquivos POSCAR ---
22
+ #---------------------------------------------------
23
+ A1x0 = []; A1y0 = []; A2x0 = []; A2y0 = []
24
+ #--------------------------------------------
25
+ for k in range(n_Lattice):
26
+ #---------------------
27
+ Lattice = dir_files + '/' + vLattice[k]
28
+ poscar = open(Lattice, "r")
29
+ #-------------------------------------------
30
+ for i in range(2): VTemp = poscar.readline()
31
+ param = float(VTemp)
32
+ #-------------------------------------------
33
+ A1 = poscar.readline().split(); A1x = float(A1[0])*param; A1y = float(A1[1])*param; A1z = float(A1[2])*param
34
+ A2 = poscar.readline().split(); A2x = float(A2[0])*param; A2y = float(A2[1])*param; A2z = float(A2[2])*param
35
+ A3 = poscar.readline().split(); A3x = float(A3[0])*param; A3y = float(A3[1])*param; A3z = float(A3[2])*param
36
+ #--------------------------------------------------------------------------------------------------------------
37
+ A1x0.append(A1x); A1y0.append(A1y); A2x0.append(A2x); A2y0.append(A2y) # Armazenando os vetores A1 e A2 de cada rede
38
+ #------------------------------------------------------------------------------------------------------------------------
39
+ if ((A1z != 0.0) or (A2z != 0.0) or (A3x != 0.0) or (A3y != 0.0)):
40
+ print(f' ')
41
+ print(f'========================================')
42
+ print(f'Verifique os arquivos POSCAR utilizados!')
43
+ print(f'INCOMPATIBILIDADE com o código detectada')
44
+ if (A1z != 0.0):
45
+ print(f'O vetor A1 deve possuir a forma A1 = [A1x, A1y, 0.0]')
46
+ if (A2z != 0.0):
47
+ print(f'O vetor A2 deve possuir a forma A2 = [A2x, A2y, 0.0]')
48
+ if ((A3x != 0.0) or (A3y != 0.0)):
49
+ print(f'O vetor A3 deve possuir a forma A3 = [0.0, 0.0, A3z]')
50
+ print(f'========================================')
51
+ print(f' ')
52
+ #==========
53
+ sys.exit()
54
+ #=========
55
+
56
+
15
57
  # Listando os arquivos dentro do diretório "dir_poscar"
16
58
  poscar_dir_path = os.path.join(dir_files, dir_poscar)
17
59
  files0 = [name for name in os.listdir(poscar_dir_path) if os.path.isfile(os.path.join(poscar_dir_path, name))]
@@ -85,8 +127,7 @@ for name in files0:
85
127
 
86
128
  print(f"POSCAR file: {name}")
87
129
  print(f"Discrepância encontrada em relação ao ângulo de rotação em torno do eixo Z")
88
- print(f"Movendo arquivo original para a pasta 'POSCAR_original' e criando versão corrigida.")
89
-
130
+ print(f"Min. Rotation Angle: {int(menor_0)}º / Angle at Origin: {int(menor_1)}º")
90
131
  op_alvo = None
91
132
  for op_cart in operacoes_1:
92
133
  R_cart = op_cart.rotation_matrix
@@ -110,6 +151,7 @@ for name in files0:
110
151
 
111
152
  deslocamento_frac = np.array([-p_direto[0], -p_direto[1], 0.0])
112
153
  print(f"Coordenadas diretas do eixo de rotação apropriado: ({p_direto[0]:.9f}, {p_direto[1]:.9f})")
154
+ print(f"Movendo arquivo original para a pasta 'POSCAR_original' e criando versão corrigida.")
113
155
 
114
156
  estrutura_corrigida = estrutura.copy()
115
157
  indices_dos_sites = list(range(len(estrutura_corrigida)))
@@ -118,7 +160,6 @@ for name in files0:
118
160
  # Salvar o arquivo corrigido com o nome_original no diretório original.
119
161
  Lattice_new_file = os.path.join(poscar_dir_path, name)
120
162
  estrutura_corrigida.to(fmt="poscar", filename=Lattice_new_file)
121
- print(f"Estrutura corrigida salva como '{name}' no diretório '{dir_poscar}'.")
122
163
 
123
164
  print(f"-------------------------------------------------------------")
124
165
 
@@ -6,7 +6,7 @@ import json
6
6
 
7
7
  setup(
8
8
  name = "SAMBA_ilum",
9
- version = "1.0.0.495",
9
+ version = "1.0.0.496",
10
10
  entry_points={'console_scripts': ['samba_ilum = samba_ilum:main']},
11
11
  description = "...",
12
12
  author = "Augusto de Lelis Araujo",
File without changes
File without changes